RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1126661" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1126661 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4109811 4109811 PRJNA1126661_P_NODE_75964_length_238_cov_3.387879_g75434_i0 PRJNA1126661 75964 238 3.387879 8.06315202 Halobaculum sp. CBA1158 2904243 Archaea Archaea 390 3.99e-104   NTclustered gi|2176096791|gb|CP090373.1| 2904243 g75434 i0 96.218 38.8865546218487 238 9 100 0 1 238 806 1043 Halobaculum sp. CBA1158 plasmid pCBA1158-2, complete sequence blastn 9255 390 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum sp. CBA1158
10486332 10486332 PRJNA1126661_P_NODE_77009_length_234_cov_8.155280_g76479_i0 PRJNA1126661 77009 234 8.15528 19.0833552 Halococcus dombrowskii 179637 Archaea Archaea 272 1.4799999999999999e-68   NTclustered gi|2221489803|gb|CP095005.1| 179637 g76479 i0 87.866 2.05555555555556 239 20 99 6 4 234 2084402 2084165 Halococcus dombrowskii strain H4 chromosome, complete genome blastn 481 272 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
20684036 20684036 PRJNA1126661_P_NODE_52897_length_292_cov_4.913242_g52368_i0 PRJNA1126661 52897 292 4.913242 14.34666664 Haloarcula regularis 3033392 Archaea Archaea 302 2.43e-77   NTclustered gi|2463595546|gb|CP119795.1| 3033392 g52368 i0 94.819 22.5616438356164 193 10 66 0 100 292 22751 22943 Haloarcula regularis strain SYNS111 plasmid unnamed1, complete sequence blastn 6588 302 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula regularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;