RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1126661" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1126661 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1557188 1557188 PRJNA1126661_P_NODE_52442_length_293_cov_3.900000_g51913_i0 PRJNA1126661 52442 293 3.9 11.427 Polulichloris maxima 2704661 Plants Plants 252 2.4999999999999997e-62   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g51913 i0 97.315 91.3447098976109 149 3 99 1 4 151 126300 126152 Polulichloris maxima clone L123 chloroplast, complete genome blastn 26764 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima
6660279 6660279 PRJNA1126661_P_NODE_38846_length_301_cov_3.850877_g38317_i0 PRJNA1126661 38846 301 3.850877 11.59113977 Trebouxia aggregata 160068 Plants Plants 196 1.22e-45   NTclustered gi|162134372|gb|EU123990.1| 160068 g38317 i0 99.083 0.624584717607973 109 1 61 0 149 257 1290 1182 Trebouxia aggregata strain SAG 219-1d M polypeptide of photosystem I (psaM), hypothetical chloroplast RF12 (ycf12), and K protein of photosystem II (psbK) genes, complete cds; and magnesium chelatase subunit of protochlorophyllide (chlI) gene, partial cds; chloroplast blastn 188 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
11760753 11760753 PRJNA1126661_P_NODE_16310_length_326_cov_4.695652_g15781_i0 PRJNA1126661 16310 326 4.695652 15.30782552 Trebouxia sp. SL0000003 3350044 Plants Plants 224 6.139999999999998e-54   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g15781 i0 93.377 0.46319018404908 151 10 46 0 176 326 4107600 4107750 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 151 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;