RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1126198 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15057895 15057895 PRJNA1126198_P_NODE_199752_length_293_cov_0.909091_g199032_i0 PRJNA1126198 199752 293 0.909091 2.66363663 PVC group 1783257 Bacteria Bacteria 128 4.3899999999999995e-25   NTclustered gi|2874253952|emb|OY970277.1| 412056 g199032 i0 81.699 20.4505119453925 153 28 52 0 3 155 3317499 3317651 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 5992 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
15583947 15583947 PRJNA1126198_P_NODE_116613_length_331_cov_1.790698_g115894_i0 PRJNA1126198 116613 331 1.790698 5.92721038 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 298 3.63e-76   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g115894 i0 83.234 143.546827794562 334 46 100 8 1 331 276759 276433 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 47514 298 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis
18132761 18132761 PRJNA1126198_P_NODE_100675_length_342_cov_1.457249_g99956_i0 PRJNA1126198 100675 342 1.457249 4.98379158 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 246 1.38e-60   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g99956 i0 93.373 78.7251461988304 166 11 49 0 177 342 3261422 3261587 Luteolibacter sp. Populi chromosome, complete genome blastn 26924 246 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi
18133254 18133254 PRJNA1126198_P_NODE_373735_length_251_cov_1.629213_g373014_i0 PRJNA1126198 373735 251 1.629213 4.08932463 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 65.8 2.92e-6   NTclustered gi|2813917447|gb|CP170506.1| 2811408 g373014 i0 97.368 3.70517928286853 38 1 15 0 171 208 3512617 3512580 MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome blastn 930 65.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
19407403 19407403 PRJNA1126198_P_NODE_368336_length_252_cov_0.871508_g367615_i0 PRJNA1126198 368336 252 0.871508 2.19620016 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 226 1.2699999999999999e-54   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g367615 i0 86.473 11.6428571428571 207 26 82 2 7 212 318241 318446 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 2934 226 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis
21958415 21958415 PRJNA1126198_P_NODE_406358_length_248_cov_0.891429_g405637_i0 PRJNA1126198 406358 248 0.891429 2.21074392 Congregicoccus parvus 3081749 Bacteria Bacteria 73.1 1.72e-8   NTclustered gi|2599616993|dbj|AP028972.1| 3081749 g405637 i0 95.556 0.181451612903226 45 2 18 0 1 45 489189 489233 Opitutales bacterium ASA1 DNA, complete genome blastn 45 73.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Alterococcaceae Congregicoccus Congregicoccus parvus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;