RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1126198 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1555846 1555846 PRJNA1126198_P_NODE_213942_length_288_cov_1.451163_g213221_i0 PRJNA1126198 213942 288 1.451163 4.17934944 Fretibacterium fastidiosum 651822 Bacteria Bacteria 499 7.92e-137   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g213221 i0 98.246 1.98958333333333 285 5 99 0 1 285 2439763 2440047 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 573 499 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
2832191 2832191 PRJNA1126198_P_NODE_369483_length_252_cov_0.871508_g368762_i0 PRJNA1126198 369483 252 0.871508 2.19620016 Fretibacterium fastidiosum 651822 Bacteria Bacteria 460 3.2e-125   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g368762 i0 99.605 2.00793650793651 253 0 100 1 1 252 1368017 1368269 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 506 460 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
11760189 11760189 PRJNA1126198_P_NODE_395670_length_249_cov_0.886364_g394949_i0 PRJNA1126198 395670 249 0.886364 2.20704636 Fretibacterium fastidiosum 651822 Bacteria Bacteria 449 6.840000000000001e-122   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g394949 i0 99.197 4.97991967871486 249 2 100 0 1 249 2583020 2582772 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 1240 449 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
13035455 13035455 PRJNA1126198_P_NODE_459611_length_243_cov_0.911765_g458890_i0 PRJNA1126198 459611 243 0.911765 2.21558895 Fretibacterium fastidiosum 651822 Bacteria Bacteria 444 3.09e-120   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g458890 i0 99.588 2 243 1 100 0 1 243 586527 586769 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 486 444 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
23233877 23233877 PRJNA1126198_P_NODE_376779_length_251_cov_0.876404_g376058_i0 PRJNA1126198 376779 251 0.876404 2.19977404 Fretibacterium fastidiosum 651822 Bacteria Bacteria 459 1.1499999999999996e-124   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g376058 i0 99.602 2 251 1 100 0 1 251 2126263 2126013 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 502 459 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;