RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1126198 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14310098 14310098 PRJNA1126198_P_NODE_214012_length_288_cov_1.446512_g213291_i0 PRJNA1126198 214012 288 1.446512 4.16595456 Sycon ciliatum 27933 Porifera other_Eukaryota 248 3.17e-61   NTclustered gi|2732923973|ref|XM_065328925.1| 27933 g213291 i0 90.476 67.3020833333333 189 16 65 2 100 287 465 278 PREDICTED: Sycon ciliatum histone H3 (LOC135815608), mRNA blastn 19383 248 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
16332830 16332830 PRJNA1126198_P_NODE_38953_length_420_cov_8.080692_g38240_i0 PRJNA1126198 38953 420 8.080692 33.9389064 Haplosclerida 6049 Porifera other_Eukaryota 108 8.51e-19   NTclustered gi|1284883228|gb|KY825184.1| 178514 g38240 i0 81.159 5.63809523809524 138 22 33 3 266 402 3474 3340 Amphimedon compressa voucher MNRJ:18771 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 2368 108 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon compressa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;