RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1126198 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1556344 1556344 PRJNA1126198_P_NODE_451262_length_243_cov_3.729412_g450541_i0 PRJNA1126198 451262 243 3.729412 9.06247116 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 159 1.2499999999999999e-34   NTclustered gi|325195233|emb|FR826028.1| 890382 g450541 i0 97.826 0.378600823045267 92 2 38 0 149 240 176 267 Albugo laibachii Nc14, genomic contig CONTIG_3114_NC14_v4_456_30 blastn 92 159 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4108073 4108073 PRJNA1126198_P_NODE_10464_length_586_cov_14.222222_g9794_i0 PRJNA1126198 10464 586 14.222222 83.34222092 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 171 1.5299999999999998e-37   NTclustered gi|325195233|emb|FR826028.1| 890382 g9794 i0 88.276 0.41296928327645 145 14 24 3 225 367 432 289 Albugo laibachii Nc14, genomic contig CONTIG_3114_NC14_v4_456_30 blastn 242 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
10485235 10485235 PRJNA1126198_P_NODE_451209_length_243_cov_5.323529_g450488_i0 PRJNA1126198 451209 243 5.323529 12.93617547 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 150 7.55e-32   NTclustered gi|325195233|emb|FR826028.1| 890382 g450488 i0 95.745 0.534979423868313 94 2 38 2 1 93 101 193 Albugo laibachii Nc14, genomic contig CONTIG_3114_NC14_v4_456_30 blastn 130 150 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
11760224 11760224 PRJNA1126198_P_NODE_410850_length_247_cov_2.183908_g410129_i0 PRJNA1126198 410850 247 2.183908 5.39425276 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 279 9.41e-71   NTclustered gi|2248513440|ref|NC_063805.1| 4781 g410129 i0 87.917 100.072874493927 240 26 97 3 1 239 2439 2202 Plasmopara halstedii isolate 710 mitochondrion, complete genome blastn 24718 279 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
16858714 16858714 PRJNA1126198_P_NODE_362694_length_252_cov_12.754190_g361973_i0 PRJNA1126198 362694 252 12.75419 32.1405588 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 220 5.919999999999999e-53   NTclustered gi|325195233|emb|FR826028.1| 890382 g361973 i0 90.116 0.682539682539683 172 14 67 3 81 250 456 286 Albugo laibachii Nc14, genomic contig CONTIG_3114_NC14_v4_456_30 blastn 172 220 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
19407715 19407715 PRJNA1126198_P_NODE_53936_length_391_cov_4.424528_g53219_i0 PRJNA1126198 53936 391 4.424528 17.29990448 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 255 2.65e-63   NTclustered gi|325194231|emb|FR825088.1| 890382 g53219 i0 92.655 0.872122762148338 177 13 45 0 215 391 7 183 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 341 255 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
21957861 21957861 PRJNA1126198_P_NODE_1238_length_1795_cov_19.905343_g1020_i0 PRJNA1126198 1238 1795 19.905343 357.30090685 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 2652 0   NTclustered gi|325194231|emb|FR825088.1| 890382 g1020 i0 97.079 4.44122562674095 1575 45 88 1 1 1574 1575 1 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 7972 2652 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
21958409 21958409 PRJNA1126198_P_NODE_404398_length_248_cov_1.314286_g403677_i0 PRJNA1126198 404398 248 1.314286 3.25942928 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 158 4.62e-34   NTclustered gi|675168846|ref|XM_008895060.1| 761204 g403677 i0 79.556 69.0564516129032 225 42 90 4 2 224 245 467 Phytophthora parasitica INRA-310 ubiquitin-60S ribosomal protein L40 mRNA blastn 17126 158 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;