RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1126198 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2305509 2305509 PRJNA1126198_P_NODE_18002_length_506_cov_1.133949_g17312_i0 PRJNA1126198 18002 506 1.133949 5.73778194 Metazoa 33208 Mollusca Mollusca 56.5 0.004   NTclustered gi|2671789902|gb|PP198933.1| 31199 g17312 i0 97.059 0.681818181818182 34 0 7 1 86 118 11534 11567 Argopecten irradians clone evm.model.130.122 spatiotemporal phototransduction pathway protein gene, complete cds blastn 345 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
5384472 5384472 PRJNA1126198_P_NODE_256725_length_276_cov_1.536946_g256004_i0 PRJNA1126198 256725 276 1.536946 4.24197096 Mizuhopecten yessoensis 6573 Mollusca Mollusca 158 5.23e-34   NTclustered gi|1207979960|ref|XM_021483822.1| 6573 g256004 i0 84.906 2.8804347826087 159 20 57 4 1 157 256 100 PREDICTED: Mizuhopecten yessoensis 40S ribosomal protein S11-A-like (LOC110440659), partial mRNA blastn 795 158 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;