RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1126198 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
281052 281052 PRJNA1126198_P_NODE_10841_length_580_cov_3.315582_g10169_i0 PRJNA1126198 10841 580 3.315582 19.2303756 Acytostelium subglobosum 361139 Evosea other_Eukaryota 202 5.369999999999999e-47   NTclustered gi|831792076|ref|XM_012904471.1| 1410327 g10169 i0 82.627 0.803448275862069 236 33 40 6 292 523 1643 1412 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 466 202 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
281311 281311 PRJNA1126198_P_NODE_253141_length_277_cov_1.519608_g252420_i0 PRJNA1126198 253141 277 1.519608 4.20931416 Entamoeba histolytica 5759 Evosea other_Eukaryota 158 5.25e-34   NTclustered gi|1865795|emb|Y11271.1| 5759 g252420 i0 88.06 4.6028880866426 134 14 48 2 145 277 1093 961 E.histolytica ss1 gene blastn 1275 158 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
281680 281680 PRJNA1126198_P_NODE_438701_length_245_cov_0.901163_g437980_i0 PRJNA1126198 438701 245 0.901163 2.20784935 Heterostelium album 2086695 Evosea other_Eukaryota 62.1 3.67e-5   NTclustered gi|1160570722|ref|XM_020574855.1| 670386 g437980 i0 100 13.1469387755102 33 0 13 0 138 170 3176 3144 Polysphondylium pallidum PN500 DNA polymerase zeta catalytic subunit (polZ), partial mRNA blastn 3221 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
281738 281738 PRJNA1126198_P_NODE_458381_length_243_cov_0.917647_g457660_i0 PRJNA1126198 458381 243 0.917647 2.22988221 Acytostelium subglobosum 361139 Evosea other_Eukaryota 52.8 0.022   NTclustered gi|831753239|ref|XM_012892301.1| 1410327 g457660 i0 100 0.11522633744856 28 0 12 0 215 242 1330 1303 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
13035497 13035497 PRJNA1126198_P_NODE_471651_length_242_cov_0.911243_g470930_i0 PRJNA1126198 471651 242 0.911243 2.20520806 Entamoeba dispar 46681 Evosea other_Eukaryota 161 3.47e-35   NTclustered gi|167381393|ref|XM_001735644.1| 370354 g470930 i0 80.18 0.91735537190082606 222 38 90 6 22 240 804 586 Entamoeba dispar SAW760 uncharacterized protein (EDI_025790), partial mRNA blastn 222 161 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
20156695 20156695 PRJNA1126198_P_NODE_265836_length_274_cov_1.373134_g265115_i0 PRJNA1126198 265836 274 1.373134 3.76238716 Entamoeba 5758 Evosea other_Eukaryota 189 1.84e-43   NTclustered gi|807611|gb|L36807.1|ENHRGS 5759 g265115 i0 98.148 38.7408759124088 108 2 39 0 1 108 3059 2952 Entamoeba histolytica strain HK9 17S ribosomal RNA (17S rRNA) gene, partial sequence blastn 10615 189 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;