RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1126198 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6659008 6659008 PRJNA1126198_P_NODE_191586_length_295_cov_3.058559_g190866_i0 PRJNA1126198 191586 295 3.058559 9.02274905 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 108 5.76e-19   NTclustered gi|470458637|ref|XM_004341224.1| 1257118 g190866 i0 95.522 0.430508474576271 67 3 43 0 19 85 1611 1545 Acanthamoeba castellanii str. Neff Flavinbinding monooxygenase-like subfamily protein (ACA1_262350), partial mRNA blastn 127 108 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7934049 7934049 PRJNA1126198_P_NODE_119527_length_329_cov_2.214844_g118808_i0 PRJNA1126198 119527 329 2.214844 7.28683676 Thecamoeba foliovenanda 2653195 Discosea other_Eukaryota 603 6.819999999999999e-168   NTclustered gi|1758284524|gb|MN544291.1| 2653195 g118808 i0 99.697 44.7629179331307 330 0 100 1 1 329 590 919 Thecamoeba foliovenanda strain Ta68 small subunit ribosomal RNA gene, partial sequence blastn 14727 603 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba foliovenanda
9209205 9209205 PRJNA1126198_P_NODE_2228_length_1255_cov_3.491540_g1849_i0 PRJNA1126198 2228 1255 3.49154 43.818827 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 942 0   NTclustered gi|470484553|ref|XM_004344028.1| 1257118 g1849 i0 80.614 63.6326693227092 1238 224 98 14 1 1230 184 1413 Acanthamoeba castellanii str. Neff Sadenosyl-L-homocysteine hydrolase, putative (ACA1_054200), partial mRNA blastn 79859 942 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9209895 9209895 PRJNA1126198_P_NODE_86188_length_354_cov_1.103203_g85470_i0 PRJNA1126198 86188 354 1.103203 3.90533862 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 276 1.83e-69   NTclustered gi|470521902|ref|XM_004353878.1| 1257118 g85470 i0 81.006 86.4237288135593 358 58 99 9 1 353 1507 1859 Acanthamoeba castellanii str. Neff integral membrane protein 1 isoform 5, putative (ACA1_169070), partial mRNA blastn 30594 276 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14310717 14310717 PRJNA1126198_P_NODE_494812_length_210_cov_4.218978_g494090_i0 PRJNA1126198 494812 210 4.218978 8.8598538 Thecamoeba foliovenanda 2653195 Discosea other_Eukaryota 388 1.24e-103   NTclustered gi|1758284524|gb|MN544291.1| 2653195 g494090 i0 100 30.7238095238095 210 0 100 0 1 210 1314 1105 Thecamoeba foliovenanda strain Ta68 small subunit ribosomal RNA gene, partial sequence blastn 6452 388 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba foliovenanda
18881741 18881741 PRJNA1126198_P_NODE_15595_length_524_cov_13.771619_g14910_i0 PRJNA1126198 15595 524 13.771619 72.16328356 Vannellidae 95227 Discosea other_Eukaryota 797 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g14910 i0 94.14 100.81106870229 529 21 100 9 1 524 1693 1170 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 52825 802 0.993765586034913 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
19406964 19406964 PRJNA1126198_P_NODE_13496_length_545_cov_5.527542_g12815_i0 PRJNA1126198 13496 545 5.527542 30.1251039 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 231 6.41e-56   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g12815 i0 80.464 55.0990825688073 302 59 55 0 103 404 422 121 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 30029 231 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;