RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1126198 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
281091 281091 PRJNA1126198_P_NODE_126281_length_325_cov_3.607143_g125562_i0 PRJNA1126198 126281 325 3.607143 11.72321475 Polychytrium aggregatum 110093 Fungi Fungi 176 1.74e-39   NTclustered gi|2432131389|ref|XM_053109302.1| 110093 g125562 i0 77.188 7.59692307692308 320 61 97 11 12 325 589 276 Polychytrium aggregatum ribosomal protein S3Ae (BJ171DRAFT_487525), mRNA blastn 2469 176 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
1555839 1555839 PRJNA1126198_P_NODE_21262_length_485_cov_2.376214_g20564_i0 PRJNA1126198 21262 485 2.376214 11.5246379 Polychytrium aggregatum 110093 Fungi Fungi 254 1.21e-62   NTclustered gi|2432146664|ref|XM_053113161.1| 110093 g20564 i0 81.21 29.1731958762887 314 59 65 0 13 326 80 393 Polychytrium aggregatum 40S ribosomal protein S22-A (BJ171DRAFT_558627), partial mRNA blastn 14149 254 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
2831836 2831836 PRJNA1126198_P_NODE_19123_length_498_cov_2.520000_g18429_i0 PRJNA1126198 19123 498 2.52 12.5496 Polychytrium aggregatum 110093 Fungi Fungi 405 3.24e-108   NTclustered gi|2432130198|ref|XM_053115874.1| 110093 g18429 i0 81.363 97.8915662650602 499 91 100 2 1 498 1290 793 Polychytrium aggregatum P-loop containing nucleoside triphosphate hydrolase protein (BJ171DRAFT_7386), mRNA blastn 48750 405 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
7934900 7934900 PRJNA1126198_P_NODE_8287_length_634_cov_5.780749_g7628_i0 PRJNA1126198 8287 634 5.780749 36.64994866 Polychytrium aggregatum 110093 Fungi Fungi 195 9.89e-45   NTclustered gi|2432162630|ref|XM_053112000.1| 110093 g7628 i0 76.238 21.9605678233438 404 74 62 16 81 476 134 523 Polychytrium aggregatum ribosomal protein L22/L17 (BJ171DRAFT_515986), mRNA blastn 13923 195 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
21958153 21958153 PRJNA1126198_P_NODE_283358_length_269_cov_5.632653_g282637_i0 PRJNA1126198 283358 269 5.632653 15.15183657 Polychytrium aggregatum 110093 Fungi Fungi 121 6.66e-23   NTclustered gi|2432138713|ref|XM_053107478.1| 110093 g282637 i0 84.252 7.95167286245353 127 16 46 3 92 216 148 24 Polychytrium aggregatum large subunit ribosomal protein 29 (BJ171DRAFT_421272), partial mRNA blastn 2139 121 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;