RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1126198 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2832115 2832115 PRJNA1126198_P_NODE_333523_length_258_cov_1.675676_g332802_i0 PRJNA1126198 333523 258 1.675676 4.32324408 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 344 3.46e-90   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g332802 i0 90.734 207.197674418605 259 23 100 1 1 258 3446176 3446434 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 53457 344 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
6659122 6659122 PRJNA1126198_P_NODE_248046_length_278_cov_2.629268_g247325_i0 PRJNA1126198 248046 278 2.629268 7.30936504 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 381 2.869999999999999e-101   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g247325 i0 91.667 86.7158273381295 276 22 99 1 1 276 3446707 3446981 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 24107 381 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
16858924 16858924 PRJNA1126198_P_NODE_439234_length_245_cov_0.901163_g438513_i0 PRJNA1126198 439234 245 0.901163 2.20784935 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 231 2.65e-56   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g438513 i0 84.17 87.8367346938775 259 19 97 9 1 238 3251898 3251641 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 21520 231 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
21432388 21432388 PRJNA1126198_P_NODE_442677_length_244_cov_1.812865_g441956_i0 PRJNA1126198 442677 244 1.812865 4.4233906 Peredibacter 263370 Bacteria Bacteria 446 8.639999999999999e-121   NTclustered gi|2631252187|gb|CP139487.1| 28202 g441956 i0 99.59 236.635245901639 244 1 100 0 1 244 511286 511529 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 57739 446 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
21957944 21957944 PRJNA1126198_P_NODE_173798_length_302_cov_2.860262_g173078_i0 PRJNA1126198 173798 302 2.860262 8.63799124 Bdellovibrio reynosensis 2835041 Bacteria Bacteria 460 3.94e-125   NTclustered gi|2216477995|gb|CP093442.1| 2835041 g173078 i0 94.098 217.228476821192 305 14 100 4 1 302 950548 950245 Bdellovibrio reynosensis strain LBG001 chromosome, complete genome blastn 65603 460 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio reynosensis
23982610 23982610 PRJNA1126198_P_NODE_329099_length_259_cov_1.661290_g328378_i0 PRJNA1126198 329099 259 1.66129 4.3027411 Bdellovibrio 958 Bacteria Bacteria 217 7.9e-52   NTclustered gi|2800920897|gb|CP168968.1| 959 g328378 i0 81.992 165.362934362934 261 42 99 4 2 259 778137 777879 Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome blastn 42829 219 0.990867579908676 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
25256543 25256543 PRJNA1126198_P_NODE_17920_length_506_cov_1.898383_g17230_i0 PRJNA1126198 17920 506 1.898383 9.60581798 Bdellovibrio 958 Bacteria Bacteria 658 0   NTclustered gi|2800917394|gb|CP168972.1| 959 g17230 i0 90.335 200.719367588933 507 41 99 8 1 504 748374 748875 Bdellovibrio bacteriovorus strain Bd19 chromosome, complete genome blastn 101564 664 0.990963855421687 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;