RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1126198 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2305646 2305646 PRJNA1126198_P_NODE_300762_length_265_cov_2.223958_g300041_i0 PRJNA1126198 300762 265 2.223958 5.8934887 Bacillariaceae 33852 SAR_Eukaryotes SAR_Eukaryotes 473 4.3599999999999987e-129   NTclustered gi|2127877266|ref|NC_058784.1| 183589 g300041 i0 98.868 196.954716981132 265 3 100 0 1 265 46804 47068 Pseudo-nitzschia multistriata isolate CNS00142 chloroplast, complete genome blastn 52193 473 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
11760127 11760127 PRJNA1126198_P_NODE_3690_length_937_cov_3.554398_g3175_i0 PRJNA1126198 3690 937 3.554398 33.30470926 Haslea pseudostrearia 197756 SAR_Eukaryotes SAR_Eukaryotes 158 1.95e-33   NTclustered gi|2328347954|ref|NC_067578.1| 197756 g3175 i0 76.106 26.4525080042689 339 59 35 17 16 347 27587 27910 Haslea pseudostrearia strain SCCAP K-1594 mitochondrion, complete genome blastn 24786 158 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Haslea Haslea pseudostrearia
20156675 20156675 PRJNA1126198_P_NODE_245316_length_279_cov_1.684466_g244595_i0 PRJNA1126198 245316 279 1.684466 4.69966014 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 494 3.55e-135   NTclustered gi|1803023461|gb|MN937452.1| 2850 g244595 i0 98.566 196.870967741935 279 4 100 0 1 279 68221 68499 Phaeodactylum tricornutum strain ICE-H chloroplast, complete genome blastn 54927 494 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;