RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1126198 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4858557 4858557 PRJNA1126198_P_NODE_5944_length_725_cov_2.349693_g5321_i0 PRJNA1126198 5944 725 2.349693 17.03527425 Fimbriimonas 1005038 Bacteria Bacteria 1024 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g5321 i0 92.372 221.201379310345 721 51 99 3 5 725 28225 28941 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 160371 1024 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
9209725 9209725 PRJNA1126198_P_NODE_4528_length_836_cov_3.910878_g3971_i0 PRJNA1126198 4528 836 3.910878 32.69494008 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 573 1.4499999999999995e-158   NTclustered gi|2874254000|emb|OY970325.1| 157466 g3971 i0 79.481 566.74043062201 848 142 100 29 1 836 1306083 1305256 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 473795 573 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;