RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1126198 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1556176 1556176 PRJNA1126198_P_NODE_386582_length_250_cov_0.881356_g385861_i0 PRJNA1126198 386582 250 0.881356 2.20339 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 58.4 4.87e-4   NTclustered gi|916416619|ref|XM_013374087.1| 5802 g385861 i0 100 12.06 31 0 12 0 122 152 1158 1188 Eimeria tenella kelch motif domain-containing protein, putative (ETH_00008020), partial mRNA blastn 3015 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
6658978 6658978 PRJNA1126198_P_NODE_167686_length_305_cov_1.344828_g166966_i0 PRJNA1126198 167686 305 1.344828 4.1017254 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 302 2.56e-77   NTclustered gi|820695469|tpe|LN714488.1| 572307 g166966 i0 84.478 32.2 335 21 100 9 1 305 300359 300692 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 9821 302 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;