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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 13 ✖

bioproject 1

  • PRJNA1126198 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
281539 281539 PRJNA1126198_P_NODE_376761_length_251_cov_0.876404_g376040_i0 PRJNA1126198 376761 251 0.876404 2.19977404 Coccomyxa subellipsoidea 248742 Plants Plants 292 1.2299999999999999e-74   NTclustered gi|545375598|ref|XM_005651907.1| 574566 g376040 i0 87.649 1.78884462151394 251 31 100 0 1 251 989 739 Coccomyxa subellipsoidea C-169 glucose-6-phosphate dehydrogenase partial mRNA blastn 449 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
2832383 2832383 PRJNA1126198_P_NODE_446243_length_244_cov_0.912281_g445522_i0 PRJNA1126198 446243 244 0.912281 2.22596564 Chloroidium sp. UTEX 3077 2686440 Plants Plants 322 1.52e-83   NTclustered gi|1785188440|gb|MN646686.1| 2686440 g445522 i0 90.612 1.00409836065574 245 20 100 3 1 244 64458 64216 Chloroidium sp. UTEX 3077 mitochondrion, complete genome blastn 245 322 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. UTEX 3077
3580974 3580974 PRJNA1126198_P_NODE_347963_length_255_cov_1.703297_g347242_i0 PRJNA1126198 347963 255 1.703297 4.34340735 Eukaryota 2759 Plants Plants 137 6.22e-28   NTclustered gi|6119991|gb|AF183451.1| 50039 g347242 i0 85.401 53.6117647058824 137 15 53 5 116 250 217 350 Bracteacoccus giganteus strain UTEX 1251 28S ribosomal RNA gene, partial sequence blastn 13671 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Bracteacoccaceae Bracteacoccus Bracteacoccus giganteus
7934903 7934903 PRJNA1126198_P_NODE_83207_length_356_cov_2.558304_g82489_i0 PRJNA1126198 83207 356 2.558304 9.10756224 Haematococcus lacustris 44745 Plants Plants 521 2.1399999999999998e-143   NTclustered gi|1279575454|gb|MF683078.1| 44745 g82489 i0 93.258 295.480337078652 356 21 100 3 1 356 4387 4035 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 105191 521 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
9958747 9958747 PRJNA1126198_P_NODE_9128_length_613_cov_2.918519_g8465_i0 PRJNA1126198 9128 613 2.918519 17.89052147 Eukaryota 2759 Plants Plants 250 2.0099999999999997e-61   NTclustered gi|371782091|emb|HE610123.1| 3107 g8465 i0 91.398 30.6508972267537 186 10 30 5 197 381 5126 4946 Hydrodictyon reticulatum 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain M2243 blastn 18789 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Hydrodictyon Hydrodictyon reticulatum
10485078 10485078 PRJNA1126198_P_NODE_383549_length_250_cov_1.463277_g382828_i0 PRJNA1126198 383549 250 1.463277 3.6581925 Pseudochlorella signiensis 173497 Plants Plants 435 1.92e-117   NTclustered gi|725650714|ref|NC_025529.1| 173497 g382828 i0 98.008 122.056 251 4 100 1 1 250 152244 152494 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 30514 435 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
11760273 11760273 PRJNA1126198_P_NODE_428150_length_246_cov_0.895954_g427429_i0 PRJNA1126198 428150 246 0.895954 2.20404684 uncultured Trebouxia photobiont 285713 Plants Plants 392 1.15e-104   NTclustered gi|1273623725|gb|KY033354.1| 285713 g427429 i0 95.528 7.14227642276423 246 9 100 2 1 246 8556 8799 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 1757 392 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
15057985 15057985 PRJNA1126198_P_NODE_279652_length_270_cov_2.426396_g278931_i0 PRJNA1126198 279652 270 2.426396 6.5512692 Trebouxia 13786 Plants Plants 492 1.23e-134   NTclustered gi|189909382|gb|EU725860.1| 13787 g278931 i0 99.628 100.833333333333 269 1 99 0 2 270 629 361 Trebouxia asymmetrica strain SAG 48.88 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 27225 492 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
16858873 16858873 PRJNA1126198_P_NODE_419234_length_247_cov_0.885057_g418513_i0 PRJNA1126198 419234 247 0.885057 2.18609079 Polulichloris maxima 2704661 Plants Plants 424 4.1099999999999996e-114   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g418513 i0 97.571 130.02024291498 247 6 100 0 1 247 127790 127544 Polulichloris maxima clone L123 chloroplast, complete genome blastn 32115 424 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima
16859038 16859038 PRJNA1126198_P_NODE_487034_length_230_cov_3.783439_g486313_i0 PRJNA1126198 487034 230 3.783439 8.7019097 Chlamydomonas reinhardtii 3055 Plants Plants 122 1.54e-23   NTclustered gi|2082255880|ref|XM_001702589.2| 3055 g486313 i0 84.252 36.5130434782609 127 18 55 2 1 126 327 452 Chlamydomonas reinhardtii ribosomal protein L3 (CHLRE_10g417700v5), mRNA blastn 8398 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
20682967 20682967 PRJNA1126198_P_NODE_359477_length_253_cov_1.300000_g358756_i0 PRJNA1126198 359477 253 1.3 3.289 Polulichloris maxima 2704661 Plants Plants 435 1.95e-117   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g358756 i0 97.628 117.320158102767 253 6 100 0 1 253 126342 126594 Polulichloris maxima clone L123 chloroplast, complete genome blastn 29682 435 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima
23233770 23233770 PRJNA1126198_P_NODE_331519_length_259_cov_1.080645_g330798_i0 PRJNA1126198 331519 259 1.080645 2.79887055 Chloroidium sp. UTEX 3077 2686440 Plants Plants 446 9.26e-121   NTclustered gi|1785188440|gb|MN646686.1| 2686440 g330798 i0 97.683 82.1235521235521 259 6 100 0 1 259 62715 62973 Chloroidium sp. UTEX 3077 mitochondrion, complete genome blastn 21270 446 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. UTEX 3077
24507314 24507314 PRJNA1126198_P_NODE_297180_length_266_cov_1.673575_g296459_i0 PRJNA1126198 297180 266 1.673575 4.4517095 Chloroidium ellipsoideum 63676 Plants Plants 472 1.5799999999999998e-128   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g296459 i0 98.864 99.2518796992481 264 3 99 0 1 264 1877 2140 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 26401 472 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;