RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1126198" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1126198 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10484883 10484883 PRJNA1126198_P_NODE_294149_length_267_cov_1.458763_g293428_i0 PRJNA1126198 294149 267 1.458763 3.89489721 Bodo saltans 75058 Euglenozoa other_Eukaryota 377 3.55e-100   NTclustered gi|206598189|gb|FJ168553.1| 75058 g293428 i0 92.135 3.93632958801498 267 21 100 0 1 267 15815 15549 Bodo saltans clone fosmid 46A11, complete sequence blastn 1051 377 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
20682947 20682947 PRJNA1126198_P_NODE_353857_length_254_cov_1.475138_g353136_i0 PRJNA1126198 353857 254 1.475138 3.74685052 Trachelomonas volvocina 103340 Euglenozoa other_Eukaryota 327 3.42e-85   NTclustered gi|5833112|gb|AF096995.1|AF096995 103340 g353136 i0 92.174 84.3425196850394 230 18 91 0 3 232 1354 1125 Trachelomonas volvocina 18S ribosomal RNA gene, complete sequence blastn 21423 327 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Trachelomonas Trachelomonas volvocina
21958451 21958451 PRJNA1126198_P_NODE_416838_length_247_cov_0.896552_g416117_i0 PRJNA1126198 416838 247 0.896552 2.21448344 Leishmania martiniquensis 1580590 Euglenozoa other_Eukaryota 150 7.7e-32   NTclustered gi|2787672546|ref|XM_067325058.1| 1580590 g416117 i0 82.738 5.75708502024291 168 29 68 0 3 170 1380 1213 Leishmania martiniquensis uncharacterized protein (LSCM1_07696), partial mRNA blastn 1422 150 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania martiniquensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;