RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1123686" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123686 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7933892 7933892 PRJNA1123686_S_NODE_4047_length_241_cov_189.712264_g4015_i0 PRJNA1123686 4047 241 189.712264 457.20655624 Trachyphyllia geoffroyi 196280 Cnidaria other_Eukaryota 206 1.57e-48   NTclustered gi|23503507|dbj|AB085641.1| 196280 g4015 i0 100 10.8547717842324 111 0 46 0 131 241 677 567 Trachyphyllia geoffroyi mRNA for Kaede, complete cds blastn 2616 206 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Merulinidae Trachyphyllia Trachyphyllia geoffroyi
16858116 16858116 PRJNA1123686_S_NODE_3834_length_245_cov_6.430556_g3802_i0 PRJNA1123686 3834 245 6.430556 15.7548622 Clytia hemisphaerica 252671 Cnidaria other_Eukaryota 52.8 0.022   NTclustered gi|2782823983|ref|XM_067075372.1| 252671 g3802 i0 100 0.114285714285714 28 0 11 0 115 142 915 888 PREDICTED: Clytia hemisphaerica uncharacterized protein (LOC136819141), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Clytiidae Clytia Clytia hemisphaerica
21957656 21957656 PRJNA1123686_S_NODE_118_length_547_cov_64.720077_g98_i0 PRJNA1123686 118 547 64.720077 354.01882119 Trachyphyllia geoffroyi 196280 Cnidaria other_Eukaryota 1011 0   NTclustered gi|23503507|dbj|AB085641.1| 196280 g98 i0 100 35.709323583181 547 0 100 0 1 547 607 61 Trachyphyllia geoffroyi mRNA for Kaede, complete cds blastn 19533 1011 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Merulinidae Trachyphyllia Trachyphyllia geoffroyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;