RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1123686" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA1123686 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2831529 2831529 PRJNA1123686_S_NODE_11023_length_184_cov_5.496774_g10991_i0 PRJNA1123686 11023 184 5.496774 10.11406416 Leptotrichia wadei 157687 Bacteria Bacteria 340 2.99e-89   NTclustered gi|1708577445|dbj|AP019835.1| 157687 g10991 i0 100 209.190217391304 184 0 100 0 1 184 2369567 2369750 Leptotrichia wadei JMUB3934 DNA, complete genome blastn 38491 340 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
5384062 5384062 PRJNA1123686_S_NODE_505_length_381_cov_19.258523_g474_i0 PRJNA1123686 505 381 19.258523 73.37497263 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 669 0   NTclustered gi|922689899|gb|CP012410.1| 712357 g474 i0 98.421 320.734908136483 380 6 99 0 1 380 52117 51738 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 122200 669 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
8683235 8683235 PRJNA1123686_S_NODE_1647_length_300_cov_19.549815_g1615_i0 PRJNA1123686 1647 300 19.549815 58.649445 Fusobacterium 848 Bacteria Bacteria 555 1.7399999999999995e-153   NTclustered gi|1370537877|gb|CP028108.1| 860 g1615 i0 100 488.016666666667 300 0 100 0 1 300 462995 462696 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 146405 555 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
11233466 11233466 PRJNA1123686_S_NODE_13369_length_174_cov_1.972414_g13337_i0 PRJNA1123686 13369 174 1.972414 3.43200036 Fusobacterium 848 Bacteria Bacteria 316 4.7e-82   NTclustered gi|2704983719|gb|CP077132.1| 851 g13337 i0 99.425 482 174 1 100 0 1 174 92398 92571 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 83868 316 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
12508822 12508822 PRJNA1123686_S_NODE_3810_length_245_cov_29.476852_g3778_i0 PRJNA1123686 3810 245 29.476852 72.2182874 Fusobacterium 848 Bacteria Bacteria 416 6.809999999999998e-112   NTclustered gi|15028908|emb|AJ307974.1| 851 g3778 i0 97.166 478.273469387755 247 5 100 2 1 245 1413 1659 Fusobacterium nucleatum 23S rRNA gene, strain DSM 20482 blastn 117177 420 0.990476190476191 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
19406768 19406768 PRJNA1123686_S_NODE_17116_length_161_cov_11.878788_g17084_i0 PRJNA1123686 17116 161 11.878788 19.12484868 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 294 2.01e-75   NTclustered gi|922689899|gb|CP012410.1| 712357 g17084 i0 100 12.5590062111801 159 0 99 0 3 161 51583 51741 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 2022 294 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
25256420 25256420 PRJNA1123686_S_NODE_7500_length_205_cov_11.505682_g7468_i0 PRJNA1123686 7500 205 11.505682 23.5866481 Fusobacterium 848 Bacteria Bacteria 327 2.66e-85   NTclustered gi|2706407748|gb|CP077116.1| 76857 g7468 i0 96.923 440.712195121951 195 6 95 0 11 205 708869 709063 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 90346 327 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;