RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1123686" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA1123686 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4107937 4107937 PRJNA1123686_S_NODE_3484_length_250_cov_20867.307692_g3452_i0 PRJNA1123686 3484 250 20867.307692 52168.26923 Porospora cf. gigantea A 2853593 SAR_Eukaryotes SAR_Eukaryotes 62.1 3.76e-5   NTclustered gi|2794689561|ref|XM_067957401.1| 2853593 g3452 i0 93.023 0.476 43 2 17 1 138 180 704 745 MAG: Porospora cf. gigantea A uncharacterized protein (KVP18_004609), partial mRNA blastn 119 62.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Porosporidae Porospora Porospora cf. gigantea A
10484362 10484362 PRJNA1123686_S_NODE_10909_length_184_cov_21.806452_g10877_i0 PRJNA1123686 10909 184 21.806452 40.12387168 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|1620138950|ref|XM_028680261.1| 85471 g10877 i0 100 0.46195652173913 29 0 16 0 156 184 486 514 Plasmodium relictum cdc2-related protein kinase 4, putative (CRK4), partial mRNA blastn 85 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
18132626 18132626 PRJNA1123686_S_NODE_20255_length_153_cov_30.161290_g20223_i0 PRJNA1123686 20255 153 30.16129 46.1467737 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.013   NTclustered gi|1270520090|ref|XM_022955914.1| 5861 g20223 i0 100 0.183006535947712 28 0 18 0 126 153 657 630 Plasmodium yoelii DnaJ protein, putative (PY17X_0907200), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
21957669 21957669 PRJNA1123686_S_NODE_1518_length_305_cov_58.684783_g1486_i0 PRJNA1123686 1518 305 58.684783 178.98858815 Cryptosporidium ryanae 515981 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.008   NTclustered gi|2787718530|ref|XM_067340918.1| 515981 g1486 i0 100 0.095081967213114807 29 0 10 0 270 298 3169 3197 Cryptosporidium ryanae uncharacterized protein (FG386_001525), partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ryanae
22707022 22707022 PRJNA1123686_S_NODE_21218_length_151_cov_7.893443_g21186_i0 PRJNA1123686 21218 151 7.893443 11.91909893 Cryptosporidium 5806 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|18124155|gb|AF315508.1| 5807 g21186 i0 100 0.397350993377483 30 0 20 0 122 151 1537 1566 Cryptosporidium parvum ATP-binding cassette protein 2 (ABC2) gene, complete cds blastn 60 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
22707024 22707024 PRJNA1123686_S_NODE_5658_length_222_cov_21.761658_g5626_i0 PRJNA1123686 5658 222 21.761658 48.31088076 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|156101396|ref|XM_001616342.1| 5855 g5626 i0 96.875 0.418918918918919 32 1 14 0 97 128 2078 2109 Plasmodium vivax poly(A)-binding protein, putative (PVX_115005), mRNA blastn 93 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vivax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;