RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1123686" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1123686 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4858067 4858067 PRJNA1123686_S_NODE_13604_length_173_cov_3.631944_g13572_i0 PRJNA1123686 13604 173 3.631944 6.28326312 Oscillatoriales 1150 Bacteria Bacteria 294 2.19e-75   NTclustered gi|1566846289|dbj|LC455669.1| 118562 g13572 i0 100 162.872832369942 159 0 92 0 1 159 1689 1847 Arthrospira platensis NIES-46 gene for 23S ribosomal RNA, partial sequence blastn 28177 294 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Sirenicapillariaceae Limnospira Limnospira platensis
19406761 19406761 PRJNA1123686_S_NODE_15416_length_166_cov_16.401460_g15384_i0 PRJNA1123686 15416 166 16.40146 27.2264236 Prochlorococcus sp. MIT 9314 3082534 Bacteria Bacteria 56.5 0.001   NTclustered gi|2895585218|gb|CP138950.1| 3082534 g15384 i0 100 0.524096385542169 30 0 18 0 134 163 1563688 1563659 Prochlorococcus sp. MIT 9314 chromosome, complete genome blastn 87 56.5 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. MIT 9314
21432011 21432011 PRJNA1123686_S_NODE_11257_length_183_cov_2.707792_g11225_i0 PRJNA1123686 11257 183 2.707792 4.95525936 root 1 Root_unresolved Root_unresolved 331 1.79e-86   NTclustered gi|1026287181|gb|KU218955.1| 1211 g11225 i0 99.451 99.0218579234973 182 1 99 0 2 183 146 327 Uncultured cyanobacterium clone MnSV_DE08835A06 16S ribosomal RNA gene, partial sequence blastn 18121 331 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;