RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1123686" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1123686 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11759461 11759461 PRJNA1123686_S_NODE_19970_length_154_cov_6.544000_g19938_i0 PRJNA1123686 19970 154 6.544 10.07776 Heterostelium album 2086695 Evosea other_Eukaryota 56.5 0.001   NTclustered gi|1160574714|ref|XM_020581716.1| 670386 g19938 i0 96.97 0.214285714285714 33 1 21 0 120 152 2247 2279 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 33 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
16332494 16332494 PRJNA1123686_S_NODE_19653_length_155_cov_2.269841_g19621_i0 PRJNA1123686 19653 155 2.269841 3.51825355 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.004   NTclustered gi|330800430|ref|XM_003288192.1| 5786 g19621 i0 100 1.27741935483871 29 0 19 0 126 154 1477 1505 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_97960), mRNA blastn 198 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
23233180 23233180 PRJNA1123686_S_NODE_1779_length_295_cov_7.759398_g1747_i0 PRJNA1123686 1779 295 7.759398 22.8902241 Echinosteliopsis oligospora 1908696 Evosea other_Eukaryota 375 1.4299999999999998e-99   NTclustered gi|1465309723|gb|MH809394.1| 1908696 g1747 i0 92.481 37.3728813559322 266 14 88 4 36 295 1660 1925 Echinosteliopsis oligospora isolate HH14-A2-1A small subunit ribosomal RNA gene, partial sequence blastn 11025 375 1 Eukaryota Amoebozoa   Evosea Eumycetozoa   Echinosteliopsidaceae Echinosteliopsis Echinosteliopsis oligospora

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;