RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1123436" and tax_phylum = "Nitrososphaerota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1123436 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13032469 13032469 PRJNA1123436_P_NODE_106131_length_248_cov_0.880000_g104917_i0 PRJNA1123436 106131 248 0.88 2.1824 uncultured Nitrososphaerota archaeon 651141 Archaea Archaea 255 1.59e-63   NTclustered gi|2874253717|emb|OY969559.1| 651141 g104917 i0 87.838 0.895161290322581 222 22 88 5 27 245 1818235 1818016 MAG: uncultured Nitrososphaerota archaeon isolate MFD05512.bin.c.15 genome assembly, chromosome: 1 blastn 222 255 1 Archaea   Thermoproteati Nitrososphaerota         uncultured Nitrososphaerota archaeon
19406595 19406595 PRJNA1123436_P_NODE_92776_length_254_cov_1.508287_g91562_i0 PRJNA1123436 92776 254 1.508287 3.83104898 Candidatus Nitrosotenuis cloacae 1603555 Archaea Archaea 346 9.45e-91   NTclustered gi|808354332|gb|CP011097.2| 1603555 g91562 i0 91.6 0.984251968503937 250 21 98 0 2 251 324868 325117 Candidatus Nitrosotenuis cloacae strain SAT1, complete genome blastn 250 346 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae
21431239 21431239 PRJNA1123436_P_NODE_122757_length_242_cov_0.911243_g121543_i0 PRJNA1123436 122757 242 0.911243 2.20520806 Nitrososphaera 497726 Archaea Archaea 361 3.19e-95   NTclustered gi|647810480|gb|CP007536.1| 926571 g121543 i0 93.75 4.95867768595041 240 15 99 0 3 242 1543534 1543773 Nitrososphaera viennensis EN76, complete genome blastn 1200 361 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera viennensis
24504876 24504876 PRJNA1123436_P_NODE_111880_length_246_cov_0.890173_g110666_i0 PRJNA1123436 111880 246 0.890173 2.18982558 Nitrosotalea devaniterrae 1078905 Archaea Archaea 261 3.39e-65   NTclustered gi|1003583480|emb|LN890280.1| 1078905 g110666 i0 85.83 2.48373983739837 247 33 100 2 1 246 1706648 1706893 Candidatus Nitrosotalea devanaterra genome assembly, chromosome: 1 blastn 611 261 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosotaleales Nitrosotaleaceae Nitrosotalea Nitrosotalea devaniterrae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;