RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1123436" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123436 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1554697 1554697 PRJNA1123436_P_NODE_60142_length_321_cov_6.758065_g58928_i0 PRJNA1123436 60142 321 6.758065 21.69338865 uncultured Chlamydiales bacterium 174324 Bacteria Bacteria 254 7.69e-63   NTclustered gi|1370745738|gb|MH119768.1| 174324 g58928 i0 97.315 62.0778816199377 149 4 46 0 3 151 28 176 Uncultured Chlamydiales bacterium clone SU16A5ocu 16S ribosomal RNA gene, partial sequence blastn 19927 254 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
6656975 6656975 PRJNA1123436_P_NODE_123606_length_242_cov_0.911243_g122392_i0 PRJNA1123436 123606 242 0.911243 2.20520806 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 62.1 3.62e-5   NTclustered gi|2874253811|emb|OY969795.1| 464461 g122392 i0 97.222 0.148760330578512 36 1 15 0 125 160 2372975 2373010 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 36 62.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
6658470 6658470 PRJNA1123436_P_NODE_88466_length_262_cov_1.455026_g87252_i0 PRJNA1123436 88466 262 1.455026 3.81216812 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 224 4.789999999999999e-54   NTclustered gi|2874253811|emb|OY969795.1| 464461 g87252 i0 96.324 0.519083969465649 136 5 52 0 127 262 250929 250794 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 136 224 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
8682311 8682311 PRJNA1123436_P_NODE_102567_length_249_cov_0.875000_g101353_i0 PRJNA1123436 102567 249 0.875 2.17875 Chlamydiia 204429 Bacteria Bacteria 171 5.96e-38   NTclustered gi|2874253676|emb|OY969110.1| 305355 g101353 i0 89.63 11.7389558232932 135 13 54 1 25 158 413266 413400 MAG: uncultured Chlamydiae bacterium isolate MFD00082.bin.c.5 genome assembly, chromosome: 1 blastn 2923 172 0.994186046511628 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
23230979 23230979 PRJNA1123436_P_NODE_100219_length_250_cov_0.870056_g99005_i0 PRJNA1123436 100219 250 0.870056 2.17514 Parachlamydiales bacterium 2052178 Bacteria Bacteria 60.2 1.35e-4   NTclustered gi|2874253843|emb|OY969899.1| 2052178 g99005 i0 97.222 0.272 36 0 27 1 167 202 551582 551548 MAG: Parachlamydiales bacterium isolate MFD00082.bin.c.1 genome assembly, chromosome: 1 blastn 68 60.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
24506772 24506772 PRJNA1123436_P_NODE_98880_length_250_cov_0.870056_g97666_i0 PRJNA1123436 98880 250 0.870056 2.17514 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 143 1.31e-29   NTclustered gi|336478352|emb|FR872580.1| 765952 g97666 i0 77.459 1.728 244 51 97 2 9 250 217875 217634 Parachlamydia acanthamoebae UV-7, complete genome blastn 432 143 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;