RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1123436" and tax_phylum = "Candidatus Binatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Binatota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1123436 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
278775 278775 PRJNA1123436_P_NODE_102261_length_249_cov_0.875000_g101047_i0 PRJNA1123436 102261 249 0.875 2.17875 uncultured Candidatus Binatia bacterium 3036252 Bacteria Bacteria 237 5.8e-58   NTclustered gi|2891481979|emb|OZ219754.1| 3036252 g101047 i0 86.036 7.36144578313253 222 29 89 2 1 221 3050251 3050031 MAG: uncultured Candidatus Binatia bacterium isolate 58a26a4a-5c73-4e1d-804e-87f8126ae6b7 genome assembly, chromosome: 1 blastn 1833 237 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       uncultured Candidatus Binatia bacterium
1553477 1553477 PRJNA1123436_P_NODE_110702_length_246_cov_0.890173_g109488_i0 PRJNA1123436 110702 246 0.890173 2.18982558 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 119 2.16e-22   NTclustered gi|2814788387|emb|OY762897.2| 2838779 g109488 i0 84.874 0.731707317073171 119 16 48 2 124 241 1355019 1355136 MAG: Candidatus Binatia bacterium isolate 08c4157d-86a7-49cc-8b26-f3076a3ae996 genome assembly, chromosome: 1 blastn 180 119 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
16856266 16856266 PRJNA1123436_P_NODE_118194_length_244_cov_0.900585_g116980_i0 PRJNA1123436 118194 244 0.900585 2.1974274 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 159 1.2599999999999999e-34   NTclustered gi|2814788387|emb|OY762897.2| 2838779 g116980 i0 84.663 2.93852459016393 163 21 66 4 69 229 3304305 3304465 MAG: Candidatus Binatia bacterium isolate 08c4157d-86a7-49cc-8b26-f3076a3ae996 genome assembly, chromosome: 1 blastn 717 159 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;