RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1123436" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1123436 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1555237 1555237 PRJNA1123436_P_NODE_87362_length_264_cov_1.476440_g86148_i0 PRJNA1123436 87362 264 1.47644 3.8978016 Armatimonadota bacterium 2033014 Bacteria Bacteria 158 4.97e-34   NTclustered gi|2107879857|gb|CP070816.1| 2033014 g86148 i0 88.462 0.875 130 15 49 0 129 258 1364303 1364174 MAG: Armatimonadetes bacterium isolate bin117 chromosome blastn 231 158 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
13032639 13032639 PRJNA1123436_P_NODE_114351_length_245_cov_0.895349_g113137_i0 PRJNA1123436 114351 245 0.895349 2.19360505 Armatimonadota bacterium 2033014 Bacteria Bacteria 84.2 7.84e-12   NTclustered gi|2108374973|gb|CP070648.1| 2033014 g113137 i0 91.667 8.11836734693878 60 5 28 0 54 113 3988414 3988473 MAG: Armatimonadetes bacterium isolate bin88 chromosome blastn 1989 84.2 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
18130816 18130816 PRJNA1123436_P_NODE_119455_length_243_cov_1.170588_g118241_i0 PRJNA1123436 119455 243 1.170588 2.84452884 Armatimonadota bacterium 2033014 Bacteria Bacteria 52.8 0.022   NTclustered gi|2107879857|gb|CP070816.1| 2033014 g118241 i0 100 0.11522633744856 28 0 12 0 102 129 369115 369088 MAG: Armatimonadetes bacterium isolate bin117 chromosome blastn 28 52.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
23231298 23231298 PRJNA1123436_P_NODE_117699_length_244_cov_0.900585_g116485_i0 PRJNA1123436 117699 244 0.900585 2.1974274 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 279 9.27e-71   NTclustered gi|2874254000|emb|OY970325.1| 157466 g116485 i0 88.136 2.17622950819672 236 27 96 1 1 235 4633397 4633632 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 531 279 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;