RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA1123436" and tax_clade = "Stenosarchaea group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 17 ✖

bioproject 1

  • PRJNA1123436 · 17 ✖

analysis 1

  • blastn · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2304467 2304467 PRJNA1123436_P_NODE_107742_length_247_cov_0.885057_g106528_i0 PRJNA1123436 107742 247 0.885057 2.18609079 Methanothrix 2222 Archaea Archaea 446 8.759999999999998e-121   NTclustered gi|2133328945|gb|CP086219.1| 90426 g106528 i0 99.19 2 247 2 100 0 1 247 2144540 2144786 MAG: Methanothrix sp. isolate MAG 281 chromosome blastn 494 446 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
2830724 2830724 PRJNA1123436_P_NODE_60503_length_321_cov_0.911290_g59289_i0 PRJNA1123436 60503 321 0.91129 2.9252409 Methanocella conradii 1175444 Archaea Archaea 226 1.6799999999999995e-54   NTclustered gi|379319823|gb|CP003243.1| 1041930 g59289 i0 81.455 80.5576323987539 275 51 86 0 37 311 208566 208292 Methanocella conradii HZ254, complete genome blastn 25859 226 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanocellales Methanocellaceae Methanocella Methanocella conradii
4105907 4105907 PRJNA1123436_P_NODE_108384_length_247_cov_0.885057_g107170_i0 PRJNA1123436 108384 247 0.885057 2.18609079 Methanocella paludicola 570267 Archaea Archaea 368 1.95e-97   NTclustered gi|282154984|dbj|AP011532.1| 304371 g107170 i0 93.522 3.93117408906883 247 16 100 0 1 247 399441 399687 Methanocella paludicola SANAE DNA, complete genome blastn 971 368 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanocellales Methanocellaceae Methanocella Methanocella paludicola
4106084 4106084 PRJNA1123436_P_NODE_117244_length_244_cov_0.900585_g116030_i0 PRJNA1123436 117244 244 0.900585 2.1974274 Methanoregula sp. 2052170 Archaea Archaea 272 1.55e-68   NTclustered gi|2381065543|gb|CP112999.1| 2052170 g116030 i0 87.083 0.983606557377049 240 31 98 0 1 240 1057020 1057259 MAG: Methanoregula sp. isolate DGG0 chromosome, complete genome blastn 240 272 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
6658152 6658152 PRJNA1123436_P_NODE_74006_length_289_cov_1.282407_g72792_i0 PRJNA1123436 74006 289 1.282407 3.70615623 Methanoregula sp. 2052170 Archaea Archaea 385 2.32e-102   NTclustered gi|2381065543|gb|CP112999.1| 2052170 g72792 i0 90.657 1 289 27 100 0 1 289 1791082 1790794 MAG: Methanoregula sp. isolate DGG0 chromosome, complete genome blastn 289 385 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
8682766 8682766 PRJNA1123436_P_NODE_48747_length_359_cov_0.898601_g47533_i0 PRJNA1123436 48747 359 0.898601 3.22597759 root 1 Root_unresolved Root_unresolved 496 1.31e-135   NTclustered gi|2626216449|emb|OY821645.1| 90426 g47533 i0 91.667 27.0222841225627 360 26 100 4 1 359 827174 826818 MAG: Methanothrix sp. isolate d1628e35-7b52-4540-a147-c2ca1342adce genome assembly, chromosome: 1 blastn 9701 496 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
9206849 9206849 PRJNA1123436_P_NODE_111668_length_246_cov_0.890173_g110454_i0 PRJNA1123436 111668 246 0.890173 2.18982558 Candidatus Methanophaga sp. ANME-1 ERB7 2759913 Archaea Archaea 257 4.39e-64   NTclustered gi|1899286742|gb|MT631710.1| 2759913 g110454 i0 85.714 34.2276422764228 245 33 99 2 1 244 15747 15504 Candidatus Methanophaga sp. ANME-1 ERB7 clone GZfos13G2 seq_00001 genomic sequence blastn 8420 257 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales Candidatus Methanophagaceae Candidatus Methanophaga Candidatus Methanophaga sp. ANME-1 ERB7
9208368 9208368 PRJNA1123436_P_NODE_76708_length_284_cov_1.417062_g75494_i0 PRJNA1123436 76708 284 1.417062 4.02445608 Natrinema sp. SYSU A 869 2871694 Archaea Archaea 99 3.32e-16   NTclustered gi|2089988103|gb|CP082249.1| 2871694 g75494 i0 89.61 6.73239436619718 77 8 27 0 2 78 2562179 2562255 Natrinema sp. SYSU A 869 chromosome, complete genome blastn 1912 99 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema sp. SYSU A 869
9208822 9208822 PRJNA1123436_P_NODE_98948_length_250_cov_0.870056_g97734_i0 PRJNA1123436 98948 250 0.870056 2.17514 Halorubrum salinarum 2739057 Archaea Archaea 457 4.1099999999999985e-124   NTclustered gi|1848529114|gb|CP053943.1| 2739057 g97734 i0 99.6 28.6 250 1 100 0 1 250 34424 34673 Halorubrum salinarum strain RHB-C plasmid pHAR02, complete sequence blastn 7150 457 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum salinarum
10482692 10482692 PRJNA1123436_P_NODE_122069_length_243_cov_0.858824_g120855_i0 PRJNA1123436 122069 243 0.858824 2.08694232 Methanoregula sp. 2052170 Archaea Archaea 294 3.3e-75   NTclustered gi|2381065543|gb|CP112999.1| 2052170 g120855 i0 89.03 0.975308641975309 237 26 98 0 7 243 2105580 2105344 MAG: Methanoregula sp. isolate DGG0 chromosome, complete genome blastn 237 294 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
11759102 11759102 PRJNA1123436_P_NODE_83270_length_272_cov_1.160804_g82056_i0 PRJNA1123436 83270 272 1.160804 3.15738688 Natrarchaeobaculum aegyptiacum 745377 Archaea Archaea 195 3.92e-45   NTclustered gi|1196598842|gb|CP019893.1| 745377 g82056 i0 82.667 84.9007352941177 225 33 82 6 5 226 3274533 3274754 Natrarchaeobaculum aegyptiacum strain JW/NM-HA 15 chromosome, complete genome blastn 23093 195 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrarchaeobaculum Natrarchaeobaculum aegyptiacum
14308007 14308007 PRJNA1123436_P_NODE_122192_length_242_cov_1.816568_g120978_i0 PRJNA1123436 122192 242 1.816568 4.39609456 Methanosarcina barkeri 2208 Archaea Archaea 315 2.52e-81   NTclustered gi|805398754|gb|CP009526.1| 1434109 g120978 i0 90.678 1.95454545454545 236 22 98 0 3 238 1287705 1287470 Methanosarcina barkeri str. Wiesmoor, complete genome blastn 473 315 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
15581573 15581573 PRJNA1123436_P_NODE_102733_length_249_cov_0.875000_g101519_i0 PRJNA1123436 102733 249 0.875 2.17875 Halobacterium salinarum 2242 Archaea Archaea 449 6.840000000000001e-122   NTclustered gi|2696630377|gb|CP146627.1| 2242 g101519 i0 99.197 2 249 2 100 0 1 249 38185 37937 Halobacterium salinarum strain KBTZ03 plasmid pKBTZ03_58, complete sequence blastn 498 449 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium salinarum
18130439 18130439 PRJNA1123436_P_NODE_100515_length_249_cov_1.687500_g99301_i0 PRJNA1123436 100515 249 1.6875 4.201875 Methanosarcina barkeri 2208 Archaea Archaea 305 1.57e-78   NTclustered gi|805398754|gb|CP009526.1| 1434109 g99301 i0 91.48 4.44979919678715 223 18 89 1 1 222 4071039 4071261 Methanosarcina barkeri str. Wiesmoor, complete genome blastn 1108 305 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri
19404805 19404805 PRJNA1123436_P_NODE_111756_length_246_cov_0.890173_g110542_i0 PRJNA1123436 111756 246 0.890173 2.18982558 Methanoregula sp. 2052170 Archaea Archaea 322 1.53e-83   NTclustered gi|2381065543|gb|CP112999.1| 2052170 g110542 i0 90.244 1 246 24 100 0 1 246 1223014 1222769 MAG: Methanoregula sp. isolate DGG0 chromosome, complete genome blastn 246 322 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
20680134 20680134 PRJNA1123436_P_NODE_100377_length_250_cov_0.864407_g99163_i0 PRJNA1123436 100377 250 0.864407 2.1610175 Methanoregula sp. 2052170 Archaea Archaea 292 1.2299999999999999e-74   NTclustered gi|2381065543|gb|CP112999.1| 2052170 g99163 i0 87.903 1.112 248 30 99 0 1 248 1655601 1655354 MAG: Methanoregula sp. isolate DGG0 chromosome, complete genome blastn 278 292 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
23231980 23231980 PRJNA1123436_P_NODE_40939_length_394_cov_1.127726_g39725_i0 PRJNA1123436 40939 394 1.127726 4.44324044 Methanothrix sp. 90426 Archaea Archaea 640 6.319999999999999e-179   NTclustered gi|2626216449|emb|OY821645.1| 90426 g39725 i0 95.939 121.639593908629 394 16 100 0 1 394 824695 825088 MAG: Methanothrix sp. isolate d1628e35-7b52-4540-a147-c2ca1342adce genome assembly, chromosome: 1 blastn 47926 640 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;