RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1123436" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA1123436 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2830715 2830715 PRJNA1123436_P_NODE_60123_length_321_cov_30.500000_g58909_i0 PRJNA1123436 60123 321 30.5 97.905 Rebecca salina 561169 Haptophyta other_Eukaryota 255 2.14e-63   NTclustered gi|318084144|gb|HM595079.1| 561169 g58909 i0 97.333 74.2242990654206 150 4 91 0 3 152 3706 3855 Rebecca salina 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; plastid blastn 23826 255 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Rebecca Rebecca salina
12508440 12508440 PRJNA1123436_P_NODE_57590_length_328_cov_3.368627_g56376_i0 PRJNA1123436 57590 328 3.368627 11.04909656 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 244 4.7399999999999996e-60   NTclustered gi|2059554226|gb|MZ469767.1| 2200936 g56376 i0 95.455 49.0914634146341 154 6 89 1 162 315 253 405 Chrysochromulina sp. strain DAD-ALGEUK-39 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 16102 246 0.991869918699187 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;