contig_metadata
7 rows where analysis = "blastn", bioproject = "PRJNA1123309" and tax_phylum = "Myxococcota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4105199 | 4105199 | PRJNA1123309_P_NODE_21264_length_345_cov_1.110294_g20885_i0 | PRJNA1123309 | 21264 | 345 | 1.110294 | 3.8305143 | Archangium gephyra | 48 | Bacteria | Bacteria | 383 | 1.0199999999999997e-101 | NTclustered | gi|2809295724|gb|CP102578.1| | 48 | g20885 | i0 | 87.387 | 3.73623188405797 | 333 | 42 | 97 | 0 | 13 | 345 | 8552025 | 8552357 | Archangium gephyra strain SDU49 chromosome, complete genome | blastn | 1289 | 383 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Archangium | Archangium gephyra | ||
| 5381466 | 5381466 | PRJNA1123309_P_NODE_35925_length_281_cov_0.826923_g35545_i0 | PRJNA1123309 | 35925 | 281 | 0.826923 | 2.32365363 | Archangium violaceum | 83451 | Bacteria | Bacteria | 219 | 2.41e-52 | NTclustered | gi|1985695619|gb|CP069396.1| | 83451 | g35545 | i0 | 83.475 | 25.3594306049822 | 236 | 37 | 84 | 2 | 35 | 269 | 2485290 | 2485056 | Archangium violaceum strain SDU8 chromosome, complete genome | blastn | 7126 | 219 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Archangium | Archangium violaceum | ||
| 11756914 | 11756914 | PRJNA1123309_P_NODE_4410_length_687_cov_1.664495_g4077_i0 | PRJNA1123309 | 4410 | 687 | 1.664495 | 11.43508065 | Nannocystis punicea | 2995304 | Bacteria | Bacteria | 363 | 2.79e-95 | NTclustered | gi|2415023655|gb|CP114040.1| | 2995304 | g4077 | i0 | 82.599 | 62.1819505094614 | 431 | 55 | 62 | 14 | 71 | 496 | 5377565 | 5377150 | Nannocystis poenicansa strain FL3 chromosome, complete genome | blastn | 42719 | 363 | 1 | Bacteria | Pseudomonadati | Myxococcota | Nannocystales | Nannocystaceae | Nannocystis | Nannocystis punicea | |||
| 13032135 | 13032135 | PRJNA1123309_P_NODE_52831_length_250_cov_0.881356_g52451_i0 | PRJNA1123309 | 52831 | 250 | 0.881356 | 2.20339 | Labilithrix luteola | 1391654 | Bacteria | Bacteria | 235 | 2.09e-57 | NTclustered | gi|913610804|gb|CP012333.1| | 1391654 | g52451 | i0 | 84.016 | 68.712 | 244 | 39 | 98 | 0 | 7 | 250 | 10159766 | 10159523 | Labilithrix luteola strain DSM 27648, complete genome | blastn | 17178 | 235 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Labilitrichaceae | Labilithrix | Labilithrix luteola | |||
| 20155345 | 20155345 | PRJNA1123309_P_NODE_27336_length_310_cov_0.978903_g26956_i0 | PRJNA1123309 | 27336 | 310 | 0.978903 | 3.0345993 | Archangiaceae | 39 | Bacteria | Bacteria | 556 | 5.03e-154 | NTclustered | gi|2579665545|gb|CP043492.1| | 43 | g26956 | i0 | 99.032 | 223.706451612903 | 310 | 3 | 100 | 0 | 1 | 310 | 452647 | 452956 | Cystobacter fuscus strain Cbf 8 chromosome, complete genome | blastn | 69349 | 556 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Cystobacter | Cystobacter fuscus | ||
| 20679526 | 20679526 | PRJNA1123309_P_NODE_18317_length_366_cov_2.358362_g17938_i0 | PRJNA1123309 | 18317 | 366 | 2.358362 | 8.63160492 | Sandaracinus amylolyticus | 927083 | Bacteria | Bacteria | 462 | 1.35e-125 | NTclustered | gi|2183633570|gb|CP070225.1| | 927083 | g17938 | i0 | 90.857 | 270.508196721311 | 350 | 24 | 96 | 4 | 4 | 353 | 9676850 | 9676509 | Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence | blastn | 99006 | 462 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Sandaracinaceae | Sandaracinus | Sandaracinus amylolyticus | |||
| 24504149 | 24504149 | PRJNA1123309_P_NODE_26260_length_315_cov_1.000000_g25880_i0 | PRJNA1123309 | 26260 | 315 | 1 | 3.15 | Stigmatella aurantiaca | 41 | Bacteria | Bacteria | 326 | 1.57e-84 | NTclustered | gi|2244675|emb|X87291.1| | 41 | g25880 | i0 | 87.368 | 173.692063492063 | 285 | 35 | 90 | 1 | 1 | 284 | 1531 | 1247 | S.aurantiaca 23S rRNA gene | blastn | 54713 | 326 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Stigmatella | Stigmatella aurantiaca |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;