RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1123309" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123309 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
278273 278273 PRJNA1123309_P_NODE_27501_length_309_cov_1.211864_g27121_i0 PRJNA1123309 27501 309 1.211864 3.74465976 Mucor mucedo 29922 Fungi Fungi 60.2 1.72e-4   NTclustered gi|2324056763|ref|XM_051597082.1| 29922 g27121 i0 97.143 0.297734627831715 35 1 11 0 170 204 459 493 Mucor mucedo uncharacterized protein (EV154DRAFT_445331), partial mRNA blastn 92 60.2 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor mucedo
278369 278369 PRJNA1123309_P_NODE_35501_length_282_cov_0.837321_g35121_i0 PRJNA1123309 35501 282 0.837321 2.36124522 Halteromyces radiatus 101107 Fungi Fungi 126 1.51e-24   NTclustered gi|2323710896|ref|XM_051543820.1| 101107 g35121 i0 89.796 0.347517730496454 98 10 35 0 179 276 64 161 Halteromyces radiatus WD repeat domain phosphoinositide-interacting protein 3 (BX664DRAFT_324320), mRNA blastn 98 126 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Cunninghamellaceae Halteromyces Halteromyces radiatus
7931227 7931227 PRJNA1123309_P_NODE_32487_length_289_cov_1.282407_g32107_i0 PRJNA1123309 32487 289 1.282407 3.70615623 Lichtheimia ornata 688661 Fungi Fungi 119 2.6e-22   NTclustered gi|2553561755|ref|XM_058483351.1| 688661 g32107 i0 81.633 19.0899653979239 147 23 50 4 8 152 214 358 Lichtheimia ornata histone H2B (O0I10_003280), partial mRNA blastn 5517 119 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Lichtheimia Lichtheimia ornata
11756725 11756725 PRJNA1123309_P_NODE_28050_length_306_cov_1.596567_g27670_i0 PRJNA1123309 28050 306 1.596567 4.88549502 Halteromyces radiatus 101107 Fungi Fungi 189 2.08e-43   NTclustered gi|2323755492|ref|XM_051541004.1| 101107 g27670 i0 82.432 6.05555555555556 222 33 72 5 74 292 394 612 Halteromyces radiatus methylcrotonoyl-CoA carboxylase beta chain (BX664DRAFT_268602), partial mRNA blastn 1853 189 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Cunninghamellaceae Halteromyces Halteromyces radiatus
20679650 20679650 PRJNA1123309_P_NODE_27437_length_309_cov_1.631356_g27057_i0 PRJNA1123309 27437 309 1.631356 5.04089004 Halteromyces radiatus 101107 Fungi Fungi 267 9.47e-67   NTclustered gi|2323709937|ref|XM_051548792.1| 101107 g27057 i0 82.993 51.7022653721683 294 50 95 0 6 299 1087 1380 Halteromyces radiatus V-type proton ATPase catalytic subunit A (BX664DRAFT_377787), mRNA blastn 15976 267 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Cunninghamellaceae Halteromyces Halteromyces radiatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;