RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1123309" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1123309 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4105271 4105271 PRJNA1123309_P_NODE_27024_length_311_cov_1.680672_g26644_i0 PRJNA1123309 27024 311 1.680672 5.22688992 Naegleria sp. 37103 Heterolobosea other_Eukaryota 575 1.3899999999999995e-159   NTclustered gi|2651357798|gb|PP174311.1| 37103 g26644 i0 100 44.7781350482315 311 0 100 0 1 311 3678 3988 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13926 575 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
4105580 4105580 PRJNA1123309_P_NODE_54824_length_249_cov_0.875000_g54444_i0 PRJNA1123309 54824 249 0.875 2.17875 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 198 2.74e-46   NTclustered gi|2124405484|ref|XM_044686830.1| 51637 g54444 i0 82.328 3.90361445783133 232 37 92 4 20 249 794 565 Naegleria lovaniensis uncharacterized protein (C9374_011200), partial mRNA blastn 972 198 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
14307542 14307542 PRJNA1123309_P_NODE_6712_length_571_cov_3.124498_g6352_i0 PRJNA1123309 6712 571 3.124498 17.84088358 Naegleria sp. 37103 Heterolobosea other_Eukaryota 1050 0   NTclustered gi|2651357798|gb|PP174311.1| 37103 g6352 i0 99.825 18.800350262697 571 1 100 0 1 571 3638 3068 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10735 1050 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
18129781 18129781 PRJNA1123309_P_NODE_11255_length_452_cov_2.751979_g10879_i0 PRJNA1123309 11255 452 2.751979 12.43894508 Acrasis rosea 43695 Heterolobosea other_Eukaryota 514 4.65e-141   NTclustered gi|12083876|gb|AF190771.1|AF190771 43695 g10879 i0 87.253 96.1902654867257 455 52 100 4 1 452 125 576 Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds blastn 43478 514 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea
21954790 21954790 PRJNA1123309_P_NODE_11518_length_447_cov_2.970588_g11142_i0 PRJNA1123309 11518 447 2.970588 13.27852836 Acrasis rosea 43695 Heterolobosea other_Eukaryota 431 4.76e-116   NTclustered gi|12083876|gb|AF190771.1|AF190771 43695 g11142 i0 84.27 86.8769574944072 445 66 99 4 3 445 593 1035 Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds blastn 38834 431 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea
23230431 23230431 PRJNA1123309_P_NODE_21039_length_346_cov_2.282051_g20660_i0 PRJNA1123309 21039 346 2.282051 7.89589646 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 427 4.66e-115   NTclustered gi|2124407020|ref|XM_044688070.1| 51637 g20660 i0 88.986 96.5664739884393 345 38 99 0 2 346 1128 784 Naegleria lovaniensis uncharacterized protein (C9374_012317), partial mRNA blastn 33412 427 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
23230873 23230873 PRJNA1123309_P_NODE_61659_length_245_cov_0.895349_g61279_i0 PRJNA1123309 61659 245 0.895349 2.19360505 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 180 9.72e-41   NTclustered gi|290972987|ref|XM_002669186.1| 5762 g61279 i0 81.991 10.8816326530612 211 38 86 0 12 222 245 35 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_56405), mRNA blastn 2666 180 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;