RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1123309" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123309 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
278355 278355 PRJNA1123309_P_NODE_34261_length_285_cov_1.014151_g33881_i0 PRJNA1123309 34261 285 1.014151 2.89033035 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 364 2.9799999999999998e-96   NTclustered gi|2874253789|emb|OY969773.1| 412054 g33881 i0 91.923 129.238596491228 260 21 91 0 1 260 423157 422898 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 36833 364 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
2304328 2304328 PRJNA1123309_P_NODE_42842_length_263_cov_1.768421_g42462_i0 PRJNA1123309 42842 263 1.768421 4.65094723 Gemmatimonas 173479 Bacteria Bacteria 398 2.6799999999999995e-106   NTclustered gi|470475286|ref|NR_076270.1| 173480 g42462 i0 95.219 131.140684410646 251 12 95 0 5 255 1229 979 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 34490 398 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
4105468 4105468 PRJNA1123309_P_NODE_43884_length_261_cov_1.111702_g43504_i0 PRJNA1123309 43884 261 1.111702 2.90154222 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 364 2.689999999999999e-96   NTclustered gi|575456455|gb|CP007128.1| 861299 g43504 i0 92.578 103.103448275862 256 16 97 2 8 261 3043018 3043272 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 26910 364 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
5381472 5381472 PRJNA1123309_P_NODE_36385_length_279_cov_1.941748_g36005_i0 PRJNA1123309 36385 279 1.941748 5.41747692 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 104 6.99e-18   NTclustered gi|575456455|gb|CP007128.1| 861299 g36005 i0 90.909 0.275985663082437 77 7 28 0 2 78 1630188 1630264 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 77 104 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
7931443 7931443 PRJNA1123309_P_NODE_53007_length_250_cov_0.881356_g52627_i0 PRJNA1123309 53007 250 0.881356 2.20339 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 257 4.47e-64   NTclustered gi|2874254107|emb|OY970192.1| 412054 g52627 i0 85.542 17.368 249 32 99 3 4 250 3208422 3208668 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 4342 257 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9206293 9206293 PRJNA1123309_P_NODE_36388_length_279_cov_1.888350_g36008_i0 PRJNA1123309 36388 279 1.88835 5.2684965 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 113 1.16e-20   NTclustered gi|226088597|dbj|AP009153.1| 379066 g36008 i0 82.308 0.46594982078853 130 23 47 0 22 151 175630 175501 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 130 113 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
14307278 14307278 PRJNA1123309_P_NODE_43412_length_262_cov_1.343915_g43032_i0 PRJNA1123309 43412 262 1.343915 3.5210573 uncultured Gemmatimonas sp. 221169 Bacteria Bacteria 457 4.34e-124   NTclustered gi|2908993102|gb|PV095908.1| 221169 g43032 i0 99.213 96.5725190839695 254 1 97 1 10 262 158 411 Uncultured Gemmatimonas sp. clone b95e052ff97de7274ac009cc16b7aba4 16S ribosomal RNA gene, partial sequence blastn 25302 457 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas uncultured Gemmatimonas sp.
21955325 21955325 PRJNA1123309_P_NODE_56498_length_248_cov_0.880000_g56118_i0 PRJNA1123309 56498 248 0.88 2.1824 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 231 2.68e-56   NTclustered gi|2874253728|emb|OY969570.1| 412054 g56118 i0 85.973 161.895161290323 221 25 88 5 32 248 171553 171771 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 40150 231 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;