RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1123309" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1123309 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3579687 3579687 PRJNA1123309_P_NODE_67723_length_232_cov_3.194969_g67343_i0 PRJNA1123309 67723 232 3.194969 7.41232808 Chthonomonas 1077265 Bacteria Bacteria 196 9.06e-46   NTclustered gi|526641997|ref|NR_103994.1| 454171 g67343 i0 84.729 115.801724137931 203 24 87 5 32 232 323 520 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 26866 196 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
8682282 8682282 PRJNA1123309_P_NODE_67627_length_233_cov_12.625000_g67247_i0 PRJNA1123309 67627 233 12.625 29.41625 Fimbriimonas 1005038 Bacteria Bacteria 211 3.25e-50   NTclustered gi|663071213|gb|CP007139.1| 661478 g67247 i0 84.163 212.437768240343 221 31 94 4 1 219 29563 29781 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 49498 211 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
11756624 11756624 PRJNA1123309_P_NODE_20050_length_353_cov_1.667857_g19671_i0 PRJNA1123309 20050 353 1.667857 5.88753521 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 385 2.8999999999999995e-102   NTclustered gi|2874253701|emb|OY969427.1| 157466 g19671 i0 86.571 282.246458923513 350 45 99 2 5 353 3407467 3407119 MAG: uncultured Armatimonadetes bacterium isolate MFD09671.bin.1.19 genome assembly, chromosome: 1 blastn 99633 385 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
13032302 13032302 PRJNA1123309_P_NODE_67431_length_236_cov_2.785276_g67051_i0 PRJNA1123309 67431 236 2.785276 6.57325136 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 226 1.18e-54   NTclustered gi|2076447151|gb|CP075366.1| 2682144 g67051 i0 86.765 540.656779661017 204 26 86 1 4 207 893169 893371 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM8 chromosome blastn 127595 226 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
16855872 16855872 PRJNA1123309_P_NODE_68334_length_216_cov_4.587413_g67954_i0 PRJNA1123309 68334 216 4.587413 9.90881208 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 187 5.01e-43   NTclustered gi|1938770100|gb|CP054189.1| 2739509 g67954 i0 83.981 65.8888888888889 206 22 93 11 16 215 126644 126444 MAG: Chthonomonadaceae bacterium isolate H1_ARM1 chromosome, complete genome blastn 14232 187 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
25255305 25255305 PRJNA1123309_P_NODE_31400_length_292_cov_1.109589_g31020_i0 PRJNA1123309 31400 292 1.109589 3.23999988 Fimbriimonas 1005038 Bacteria Bacteria 425 1.38e-114   NTclustered gi|663071213|gb|CP007139.1| 661478 g31020 i0 93.972 253.982876712329 282 15 96 2 8 288 29005 28725 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 74163 425 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;