RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1123309" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1123309 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1553168 1553168 PRJNA1123309_P_NODE_63242_length_244_cov_0.912281_g62862_i0 PRJNA1123309 63242 244 0.912281 2.22596564 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 276 1.1999999999999998e-69   NTclustered gi|2874254108|emb|OY970193.1| 171953 g62862 i0 88.596 0.934426229508197 228 25 93 1 17 244 2946076 2946302 MAG: uncultured Acidobacteriota bacterium isolate MFD09206.bin.1.42 genome assembly, chromosome: 1 blastn 228 276 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
6132003 6132003 PRJNA1123309_P_NODE_9205_length_496_cov_1.385343_g8831_i0 PRJNA1123309 9205 496 1.385343 6.87130128 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 604 2.9599999999999984e-168   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g8831 i0 89.278 141.510080645161 485 49 97 3 12 494 3298163 3298646 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 70189 610 0.99016393442623 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
20679800 20679800 PRJNA1123309_P_NODE_39977_length_271_cov_0.964646_g39597_i0 PRJNA1123309 39977 271 0.964646 2.6141906600000002 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.007   NTclustered gi|2874253836|emb|OY969886.1| 171953 g39597 i0 96.875 0.118081180811808 32 1 12 0 208 239 2338574 2338543 MAG: uncultured Acidobacteriota bacterium isolate MFD10007.bin.c.1 genome assembly, chromosome: 1 blastn 32 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;