RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1123309" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA1123309 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1553226 1553226 PRJNA1123309_P_NODE_7362_length_549_cov_1.724790_g7000_i0 PRJNA1123309 7362 549 1.72479 9.4690971 Chlamydomonas reinhardtii 3055 Plants Plants 117 1.89e-21   NTclustered gi|2082259434|ref|XM_001700488.2| 3055 g7000 i0 87.879 2.98907103825137 99 12 18 0 440 538 2568 2470 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g492950v5), mRNA blastn 1641 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
7931665 7931665 PRJNA1123309_P_NODE_9587_length_486_cov_1.987893_g9212_i0 PRJNA1123309 9587 486 1.987893 9.66115998 Auxenochlorella protothecoides 3075 Plants Plants 353 1.16e-92   NTclustered gi|760444702|ref|XM_011401118.1| 3075 g9212 i0 84.341 64.1522633744856 364 53 74 3 94 455 124 485 Auxenochlorella protothecoides 40S ribosomal protein S23-2 partial mRNA blastn 31178 353 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
15581027 15581027 PRJNA1123309_P_NODE_25893_length_317_cov_0.954918_g25513_i0 PRJNA1123309 25893 317 0.954918 3.02709006 Volvox carteri 3067 Plants Plants 189 2.1699999999999992e-43   NTclustered gi|302837497|ref|XM_002950262.1| 3068 g25513 i0 80.894 33.4006309148265 246 41 77 6 27 269 737 979 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_81049), partial mRNA blastn 10588 189 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
23981362 23981362 PRJNA1123309_P_NODE_67739_length_232_cov_2.786164_g67359_i0 PRJNA1123309 67739 232 2.786164 6.46390048 Chlorophyta 3041 Plants Plants 399 6.429999999999999e-107   NTclustered gi|1913302614|gb|MW065553.1| 3088 g67359 i0 100 93.1034482758621 216 0 93 0 13 228 610 825 Tetradesmus obliquus isolate BEA D01_12 small subunit ribosomal RNA gene, partial sequence blastn 21600 399 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;