RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1122875" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1122875 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1552076 1552076 PRJNA1122875_P_NODE_19102_length_382_cov_0.906149_g18878_i0 PRJNA1122875 19102 382 0.906149 3.46148918 Halobacterium hubeiense 1407499 Archaea Archaea 52.8 0.036   NTclustered gi|966204314|emb|LN831302.1| 1407499 g18878 i0 100 0.0732984293193717 28 0 7 0 25 52 1475999 1476026 Halobacterium hubeiense strain JI20-1 genome assembly, chromosome: I blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium hubeiense
4105055 4105055 PRJNA1122875_P_NODE_8764_length_555_cov_2.261411_g8545_i0 PRJNA1122875 8764 555 2.261411 12.55083105 Salinilacihabitans rarus 2961596 Archaea Archaea 58.4 0.001   NTclustered gi|2273363716|gb|CP100762.1| 2961596 g8545 i0 97.059 0.122522522522523 34 1 6 0 214 247 545783 545750 Salinilacihabitans rarus strain AD-4 chromosome, complete genome blastn 68 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Salinilacihabitans Salinilacihabitans rarus
8681982 8681982 PRJNA1122875_P_NODE_43987_length_250_cov_1.463277_g43763_i0 PRJNA1122875 43987 250 1.463277 3.6581925 Methanoculleus 45989 Archaea Archaea 52.8 0.023   NTclustered gi|2323247744|gb|CP109831.1| 204050 g43763 i0 96.875 0.512 32 0 12 1 73 103 1897093 1897124 Methanoculleus submarinus strain DSM 15122 chromosome, complete genome blastn 128 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus submarinus
14306439 14306439 PRJNA1122875_P_NODE_2512_length_899_cov_2.699758_g2353_i0 PRJNA1122875 2512 899 2.699758 24.27082442 Halorubrum lacusprofundi 2247 Archaea Archaea 60.2 5.42e-4   NTclustered gi|222451341|gb|CP001365.1| 416348 g2353 i0 100 0.067853170189099 32 0 4 0 303 334 2187127 2187096 Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete sequence blastn 61 60.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum lacusprofundi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;