RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1122875" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1122875 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8681918 8681918 PRJNA1122875_P_NODE_27367_length_315_cov_2.884298_g27143_i0 PRJNA1122875 27367 315 2.884298 9.0855387 Tubulinea 555369 Tubulinea other_Eukaryota 582 8.459999999999998e-162   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g27143 i0 100 85.4095238095238 315 0 100 0 1 315 701 1015 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 26904 582 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
20155024 20155024 PRJNA1122875_P_NODE_11016_length_500_cov_3.882904_g10795_i0 PRJNA1122875 11016 500 3.882904 19.41452 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 268 4.459999999999999e-67   NTclustered gi|49356809|gb|AY605213.1| 282480 g10795 i0 85.551 40.662 263 30 60 6 147 407 649 905 Uncultured Lobosea clone Sey078 small subunit ribosomal RNA gene, partial sequence blastn 20331 270 0.992592592592593 Eukaryota Amoebozoa   Tubulinea         uncultured Lobosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;