RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1122875" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1122875 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2828350 2828350 PRJNA1122875_P_NODE_3423_length_811_cov_3.867209_g3237_i0 PRJNA1122875 3423 811 3.867209 31.36306499 Geotalea daltonii 1203471 Bacteria Bacteria 54.7 0.023   NTclustered gi|221562406|gb|CP001390.1| 316067 g3237 i0 92.308 0.0480887792848335 39 2 5 1 62 99 3441075 3441113 Geobacter daltonii FRC-32, complete genome blastn 39 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea daltonii
6655679 6655679 PRJNA1122875_P_NODE_47226_length_247_cov_1.097701_g47002_i0 PRJNA1122875 47226 247 1.097701 2.71132147 Geomonas paludis 2740185 Bacteria Bacteria 54.7 0.006   NTclustered gi|2233265061|gb|CP096574.1| 2740185 g47002 i0 96.875 0.129554655870445 32 1 13 0 216 247 3521945 3521914 Geomonas paludis strain RG22 chromosome, complete genome blastn 32 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas paludis
20678834 20678834 PRJNA1122875_P_NODE_11957_length_481_cov_1.848039_g11734_i0 PRJNA1122875 11957 481 1.848039 8.88906759 uncultured Syntrophus sp. 228671 Bacteria Bacteria 62.1 7.79e-5   NTclustered gi|2621703419|emb|OY762510.1| 228671 g11734 i0 89.796 0.218295218295218 49 4 10 1 427 474 201943 201991 MAG: uncultured Syntrophus sp. isolate ce8641d8-6ba7-4885-b5ca-0195441cf687 genome assembly, chromosome: 1 blastn 105 62.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus uncultured Syntrophus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;