RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1122875" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1122875 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1552067 1552067 PRJNA1122875_P_NODE_18362_length_389_cov_1.753165_g18138_i0 PRJNA1122875 18362 389 1.753165 6.81981185 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 436 8.779999999999999e-118   NTclustered gi|403082251|gb|JX463650.1| 104777 g18138 i0 88.043 94.8894601542416 368 44 95 0 1 368 953 586 Brachionus calyciflorus cytochrome c oxidase subunit 1 (COX1) gene, partial cds; mitochondrial blastn 36912 436 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
9205453 9205453 PRJNA1122875_P_NODE_1548_length_1049_cov_8.801230_g1428_i0 PRJNA1122875 1548 1049 8.80123 92.3249027 Brachionus rubens 392764 Rotifera other_Eukaryota 492 5.299999999999999e-134   NTclustered gi|1802791198|gb|MN256531.1| 392764 g1428 i0 81.298 26.8255481410867 647 85 60 26 421 1048 11195 11824 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 28140 492 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
9205652 9205652 PRJNA1122875_P_NODE_33048_length_286_cov_1.305164_g32824_i0 PRJNA1122875 33048 286 1.305164 3.73276904 Philodina citrina 468664 Rotifera other_Eukaryota 438 1.7399999999999996e-118   NTclustered gi|407227484|emb|FR856884.1| 468664 g32824 i0 95.941 5.0034965034965 271 10 95 1 1 271 2133 2402 Philodina citrina complete mitochondrial genome blastn 1431 438 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
12507491 12507491 PRJNA1122875_P_NODE_29390_length_302_cov_1.681223_g29166_i0 PRJNA1122875 29390 302 1.681223 5.07729346 Macrotrachela 104787 Rotifera other_Eukaryota 207 5.67e-49   NTclustered gi|830872171|gb|KR133449.1| 1659205 g29166 i0 79.139 28.023178807947 302 62 99 1 2 302 1689 1388 Macrotrachela sp. LH isolate hisB_LH1 histone H4, histone H3, histone H2B, and osteopetrosis associated transmembrane protein genes, complete cds; and cleft lip and palate associated transmembrane protein gene, partial cds blastn 8463 207 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Macrotrachela Macrotrachela sp. LH
20155196 20155196 PRJNA1122875_P_NODE_48396_length_246_cov_0.890173_g48172_i0 PRJNA1122875 48396 246 0.890173 2.18982558 Eurotatoria 2816136 Rotifera other_Eukaryota 255 1.58e-63   NTclustered gi|402761739|gb|JX184001.1| 104782 g48172 i0 87.671 70.6910569105691 219 27 89 0 28 246 1 219 Adineta vaga cytochrome c oxidase subunit 1 (COX1) gene, partial cds; mitochondrial blastn 17390 255 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;