RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1122875" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1122875 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1552150 1552150 PRJNA1122875_P_NODE_25622_length_327_cov_1.842520_g25398_i0 PRJNA1122875 25622 327 1.84252 6.0250404 Sycon ciliatum 27933 Porifera other_Eukaryota 180 1.35e-40   NTclustered gi|2732923973|ref|XM_065328925.1| 27933 g25398 i0 94.783 83.5168195718654 115 6 35 0 211 325 473 359 PREDICTED: Sycon ciliatum histone H3 (LOC135815608), mRNA blastn 27310 180 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
18129385 18129385 PRJNA1122875_P_NODE_32395_length_288_cov_1.409302_g32171_i0 PRJNA1122875 32395 288 1.409302 4.05878976 Sycon ciliatum 27933 Porifera other_Eukaryota 267 8.74e-67   NTclustered gi|2732922087|ref|XM_065327921.1| 27933 g32171 i0 83.333 46.6493055555556 288 48 100 0 1 288 1024 1311 PREDICTED: Sycon ciliatum V-type proton ATPase subunit B-like (LOC135814754), mRNA blastn 13435 267 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
24503876 24503876 PRJNA1122875_P_NODE_54700_length_226_cov_2.620915_g54476_i0 PRJNA1122875 54700 226 2.620915 5.9232679 Amphimedon queenslandica 400682 Porifera other_Eukaryota 193 1.14e-44   NTclustered gi|1133459419|ref|XM_003385902.3| 400682 g54476 i0 85.792 134.907079646018 183 24 81 2 3 184 1187 1006 PREDICTED: Amphimedon queenslandica polyubiquitin-B (LOC100636532), mRNA blastn 30489 193 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;