RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1122875" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1122875 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2828567 2828567 PRJNA1122875_P_NODE_51203_length_243_cov_1.470588_g50979_i0 PRJNA1122875 51203 243 1.470588 3.57352884 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 433 6.69e-117   NTclustered gi|225696216|gb|FJ805883.1| 259957 g50979 i0 98.765 161.01646090535 243 3 100 0 1 243 2583 2825 Uncultured Chroococcidiopsis sp. clone NA4_1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 39127 433 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
6655458 6655458 PRJNA1122875_P_NODE_2886_length_861_cov_4.593909_g2716_i0 PRJNA1122875 2886 861 4.593909 39.55355649 Leptolyngbya sp. 7M 2812896 Bacteria Bacteria 579 3.22e-160   NTclustered gi|2028908486|gb|CP070897.1| 2812896 g2716 i0 82.805 51.6178861788618 663 98 76 12 1 655 6695754 6696408 Leptolyngbya sp. 7M chromosome blastn 44443 579 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. 7M
6655649 6655649 PRJNA1122875_P_NODE_45786_length_249_cov_0.875000_g45562_i0 PRJNA1122875 45786 249 0.875 2.17875 Allocoleopsis franciscana 2886352 Bacteria Bacteria 361 3.3e-95   NTclustered gi|428249989|gb|CP003630.1| 1173027 g45562 i0 92.771 1 249 18 100 0 1 249 2901584 2901832 Allocoleopsis franciscana PCC 7113, complete genome blastn 249 361 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Coleofasciculaceae Allocoleopsis Allocoleopsis franciscana
16331150 16331150 PRJNA1122875_P_NODE_28373_length_308_cov_7.089362_g28149_i0 PRJNA1122875 28373 308 7.089362 21.83523496 root 1 Root_unresolved Root_unresolved 281 3.37e-71   NTclustered gi|558025694|gb|KF463268.1| 1211 g28149 i0 100 108.094155844156 152 0 97 0 4 155 241 392 Uncultured cyanobacterium clone slizCya30 16S ribosomal RNA gene, partial sequence blastn 33293 281 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
17606507 17606507 PRJNA1122875_P_NODE_51994_length_243_cov_0.905882_g51770_i0 PRJNA1122875 51994 243 0.905882 2.20129326 Chroococcidiopsis 54298 Bacteria Bacteria 438 1.4399999999999996e-118   NTclustered gi|485099142|ref|NR_102537.1| 251229 g51770 i0 99.177 181.855967078189 243 2 100 0 1 243 64 306 Chroococcidiopsis thermalis PCC 7203 strain PCC 7203 23S ribosomal RNA, complete sequence blastn 44191 438 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis thermalis
21430599 21430599 PRJNA1122875_P_NODE_10277_length_516_cov_11.446953_g10058_i0 PRJNA1122875 10277 516 11.446953 59.06627748 root 1 Root_unresolved Root_unresolved 281 5.92e-71   NTclustered gi|558025694|gb|KF463268.1| 1211 g10058 i0 100 97.437984496124 152 0 87 0 4 155 241 392 Uncultured cyanobacterium clone slizCya30 16S ribosomal RNA gene, partial sequence blastn 50278 281 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;