RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1122875" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1122875 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1552230 1552230 PRJNA1122875_P_NODE_3182_length_832_cov_1.808959_g3001_i0 PRJNA1122875 3182 832 1.808959 15.05053888 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 1020 0   NTclustered gi|2874254045|emb|OY970369.1| 305355 g3001 i0 88.889 117.123798076923 837 81 100 11 1 832 174366 175195 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 97447 1020 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
10481037 10481037 PRJNA1122875_P_NODE_11709_length_486_cov_2.285714_g11487_i0 PRJNA1122875 11709 486 2.285714 11.10857004 Candidatus Euplotechlamydia quinta 2936506 Bacteria Bacteria 652 0   NTclustered gi|2226301499|gb|ON271409.1| 2936506 g11487 i0 92.544 101.156378600823 456 32 94 2 32 486 464 10 Chlamydiia bacterium (ex Euplotes octocarinatus) isolate Zam5b-1 16S ribosomal RNA gene, partial sequence blastn 49162 652 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Euplotechlamydia Candidatus Euplotechlamydia quinta
24503286 24503286 PRJNA1122875_P_NODE_10420_length_513_cov_2.193182_g10200_i0 PRJNA1122875 10420 513 2.193182 11.25102366 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 484 4.179999999999999e-132   NTclustered gi|2874253811|emb|OY969795.1| 464461 g10200 i0 83.908 95.0740740740741 522 68 100 14 1 513 2059082 2058568 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 48773 484 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;