RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1120771" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120771 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13030352 13030352 PRJNA1120771_S_NODE_3251_length_507_cov_7.635776_g2864_i0 PRJNA1120771 3251 507 7.635776 38.71338432 Phycisphaerales bacterium 2052180 Bacteria Bacteria 699 0   NTclustered gi|1958061316|gb|CP064987.1| 2052180 g2864 i0 91.552 180.447731755424 509 39 100 4 1 507 2190851 2190345 Phycisphaerales bacterium isolate Fred_18-Q3-R57-64_MAXAC.330_cln chromosome, complete genome blastn 91487 699 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
18128278 18128278 PRJNA1120771_S_NODE_16655_length_280_cov_2.341772_g16255_i0 PRJNA1120771 16655 280 2.341772 6.5569616 Rosistilla oblonga 2527990 Bacteria Bacteria 54.7 0.007   NTclustered gi|1712737282|gb|CP036318.1| 2527990 g16255 i0 96.875 0.328571428571429 32 1 11 0 82 113 5614571 5614540 Rosistilla oblonga strain Mal33 chromosome blastn 92 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rosistilla Rosistilla oblonga
24502648 24502648 PRJNA1120771_S_NODE_4440_length_449_cov_8.305419_g4042_i0 PRJNA1120771 4440 449 8.305419 37.29133131 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 551 3.5199999999999983e-152   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g4042 i0 88.864 57.8129175946548 449 48 99 2 1 448 1867429 1867876 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 25958 551 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;