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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA1120771" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA1120771 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4103752 4103752 PRJNA1120771_S_NODE_37164_length_200_cov_2.216561_g36764_i0 PRJNA1120771 37164 200 2.216561 4.433122 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|695451661|ref|XM_009537490.1| 67593 g36764 i0 100 0.145 29 0 15 0 7 35 338 310 Phytophthora sojae hypothetical protein partial mRNA blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
4856590 4856590 PRJNA1120771_S_NODE_9004_length_348_cov_13.495082_g8604_i0 PRJNA1120771 9004 348 13.495082 46.96288536 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 529 1.2499999999999996e-145   NTclustered gi|2248513076|ref|NC_063796.1| 4786 g8604 i0 96.296 92.8620689655172 324 9 93 3 1 323 334 13 Phytophthora cryptogea culture CBS:418.71 mitochondrion, complete genome blastn 32316 529 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cryptogea
6131419 6131419 PRJNA1120771_S_NODE_22385_length_250_cov_2.545894_g21985_i0 PRJNA1120771 22385 250 2.545894 6.364735 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 440 4.1399999999999976e-119   NTclustered gi|2248512916|ref|NC_063792.1| 100870 g21985 i0 98.4 100.008 250 4 100 0 1 250 631 880 Phytophthora litchii isolate SHS3 mitochondrion, complete genome blastn 25002 440 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora litchii
8681723 8681723 PRJNA1120771_S_NODE_12687_length_309_cov_2.090226_g12287_i0 PRJNA1120771 12687 309 2.090226 6.45879834 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 87.9 7.91e-13   NTclustered gi|695450043|ref|XM_009537087.1| 67593 g12287 i0 100 16.6763754045307 47 0 15 0 10 56 1683 1729 Phytophthora sojae hypothetical protein partial mRNA blastn 5153 87.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
9204662 9204662 PRJNA1120771_S_NODE_35428_length_206_cov_2.920245_g35028_i0 PRJNA1120771 35428 206 2.920245 6.0157047 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 154 4.8e-33   NTclustered gi|673039918|ref|XM_008875698.1| 157072 g35028 i0 81.967 20.7864077669903 183 31 88 2 2 183 450 269 Aphanomyces invadans hypothetical protein mRNA blastn 4282 154 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
10480358 10480358 PRJNA1120771_S_NODE_8369_length_358_cov_2.079365_g7969_i0 PRJNA1120771 8369 358 2.079365 7.4441267 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 259 1.86e-64   NTclustered gi|675211346|ref|XM_008916310.1| 761204 g7969 i0 86.307 66.8938547486033 241 30 67 3 120 358 414 175 Phytophthora parasitica INRA-310 60S ribosomal protein L44 mRNA blastn 23948 259 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
15056213 15056213 PRJNA1120771_S_NODE_13672_length_300_cov_4.914397_g13272_i0 PRJNA1120771 13672 300 4.914397 14.743191 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 512 1.07e-140   NTclustered gi|827085599|gb|KM058092.1| 120572 g13272 i0 98.288 97.24 292 5 97 0 1 292 18 309 Peronospora bulbocapni isolate HV7 28S ribosomal RNA gene, partial sequence blastn 29172 512 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora bulbocapni
19402459 19402459 PRJNA1120771_S_NODE_23036_length_247_cov_3.764706_g22636_i0 PRJNA1120771 23036 247 3.764706 9.29882382 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 185 2.11e-42   NTclustered gi|2795040529|ref|XM_067944818.1| 4785 g22636 i0 84.021 40.3522267206478 194 29 78 2 50 242 203 395 Phytophthora cinnamomi 60S ribosomal protein L23 (IUM83_19754), partial mRNA blastn 9967 185 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
20678206 20678206 PRJNA1120771_S_NODE_9417_length_343_cov_1.693333_g9017_i0 PRJNA1120771 9417 343 1.693333 5.80813219 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 191 6.59e-44   NTclustered gi|2795032738|ref|XM_067933181.1| 4785 g9017 i0 83.495 73.7842565597668 206 32 60 2 112 316 987 783 Phytophthora cinnamomi Electron transfer flavoprotein subunit alpha, mitochondrial precursor (IUM83_08787), partial mRNA blastn 25308 191 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
21953513 21953513 PRJNA1120771_S_NODE_5138_length_426_cov_5.062663_g4738_i0 PRJNA1120771 5138 426 5.062663 21.56694438 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 141 8.520000000000001e-29   NTclustered gi|673044940|ref|XM_008878209.1| 157072 g4738 i0 86.719 4.97887323943662 128 15 30 2 200 326 1063 937 Aphanomyces invadans hypothetical protein mRNA blastn 2121 141 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
24502482 24502482 PRJNA1120771_S_NODE_14120_length_297_cov_1.452756_g13720_i0 PRJNA1120771 14120 297 1.452756 4.31468532 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 244 4.24e-60   NTclustered gi|695396854|ref|XM_009523296.1| 67593 g13720 i0 81.667 23.1346801346801 300 49 100 6 1 297 323 619 Phytophthora sojae putative GTP-binding ADP-ribosylation factor mRNA blastn 6871 244 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;