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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1120771" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1120771 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6131451 6131451 PRJNA1120771_S_NODE_32765_length_214_cov_1.362573_g32365_i0 PRJNA1120771 32765 214 1.362573 2.91590622 Pristionchus 54125 Nematoda Nematoda 106 1.43e-18   NTclustered gi|150984424|gb|EF634854.1| 54126 g32365 i0 91.026 12.5093457943925 78 7 36 0 83 160 495 572 Pristionchus pacificus small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 2677 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
9204496 9204496 PRJNA1120771_S_NODE_11348_length_321_cov_6.348921_g10948_i0 PRJNA1120771 11348 321 6.348921 20.38003641 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.008   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10948 i0 100 0.0903426791277259 29 0 9 0 293 321 51 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14305369 14305369 PRJNA1120771_S_NODE_10572_length_329_cov_18.167832_g10172_i0 PRJNA1120771 10572 329 18.167832 59.77216728 Caenorhabditis elegans 6239 Nematoda Nematoda 219 2.88e-52   NTclustered gi|1972294218|ref|NM_001380754.2| 6239 g10172 i0 88.827 57.6717325227964 179 19 54 1 91 269 982 1159 Caenorhabditis elegans Actin-3 (act-3), mRNA blastn 18974 219 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
14305583 14305583 PRJNA1120771_S_NODE_40712_length_183_cov_5.357143_g40312_i0 PRJNA1120771 40712 183 5.357143 9.80357169 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.016   NTclustered gi|1557394408|emb|LR031564.1| 45931 g40312 i0 100 0.153005464480874 28 0 15 0 156 183 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
16853857 16853857 PRJNA1120771_S_NODE_23434_length_245_cov_12.876238_g23034_i0 PRJNA1120771 23434 245 12.876238 31.5467831 Strongyloides papillosus 174720 Nematoda Nematoda 56.5 0.002   NTclustered gi|687022643|emb|LM525557.1| 174720 g23034 i0 92.683 0.16734693877551 41 0 16 2 167 206 361165 361127 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000003 blastn 41 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
21953508 21953508 PRJNA1120771_S_NODE_42318_length_175_cov_21.901515_g41918_i0 PRJNA1120771 42318 175 21.901515 38.32765125 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.015   NTclustered gi|351062746|emb|FO081321.1| 6239 g41918 i0 100 0.8 28 0 16 0 87 114 167 194 Caenorhabditis elegans Cosmid F37F2, complete sequence blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;