RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1120771" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1120771 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9956583 9956583 PRJNA1120771_S_NODE_24348_length_242_cov_1.603015_g23948_i0 PRJNA1120771 24348 242 1.603015 3.8792963 Stigmatella 40 Bacteria Bacteria 375 1.14e-99   NTclustered gi|507148216|ref|NR_103023.1| 41 g23948 i0 94.628 211.97520661157 242 13 100 0 1 242 81 322 Stigmatella aurantiaca strain DW4/3-1 23S ribosomal RNA gene, complete sequence blastn 51298 375 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
15579561 15579561 PRJNA1120771_S_NODE_34133_length_210_cov_2.586826_g33733_i0 PRJNA1120771 34133 210 2.586826 5.4323346 Sandaracinus amylolyticus 927083 Bacteria Bacteria 52.8 0.018   NTclustered gi|2183633570|gb|CP070225.1| 927083 g33733 i0 100 0.133333333333333 28 0 13 0 11 38 5442877 5442904 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;