RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1120771" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1120771 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7929576 7929576 PRJNA1120771_S_NODE_33687_length_211_cov_2.726190_g33287_i0 PRJNA1120771 33687 211 2.72619 5.7522609 Acytostelium subglobosum 361139 Evosea other_Eukaryota 56.5 0.001   NTclustered gi|831758577|ref|XM_012893933.1| 1410327 g33287 i0 100 0.14218009478673 30 0 14 0 4 33 2857 2886 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 30 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
9204534 9204534 PRJNA1120771_S_NODE_16028_length_284_cov_2.087137_g15628_i0 PRJNA1120771 16028 284 2.087137 5.92746908 Cavenderia fasciculata 261658 Evosea other_Eukaryota 158 5.4e-34   NTclustered gi|470264855|ref|XM_004361272.1| 261658 g15628 i0 78.279 1.71478873239437 244 53 86 0 41 284 697 940 Cavenderia fasciculata vacuolar protein sorting-associated protein 26 family protein (vps26l), partial mRNA blastn 487 158 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
10480369 10480369 PRJNA1120771_S_NODE_9949_length_336_cov_3.720137_g9549_i0 PRJNA1120771 9949 336 3.720137 12.49966032 Heterostelium album 2086695 Evosea other_Eukaryota 73.1 2.43e-8   NTclustered gi|1160570756|ref|XM_020574872.1| 670386 g9549 i0 83.333 0.232142857142857 78 13 23 0 256 333 537 460 Polysphondylium pallidum PN500 Rho GTPase (racB), partial mRNA blastn 78 73.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
21953383 21953383 PRJNA1120771_S_NODE_19838_length_262_cov_1.109589_g19438_i0 PRJNA1120771 19838 262 1.109589 2.90712318 Stemonaria longa 1258717 Evosea other_Eukaryota 313 9.93e-81   NTclustered gi|426281758|gb|JX681132.1| 1258717 g19438 i0 88.76 100.396946564885 258 25 97 4 1 255 832 576 Stemonaria longa actin gene, partial cds blastn 26304 313 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonaria Stemonaria longa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;