RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1120771" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1120771 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1551287 1551287 PRJNA1120771_S_NODE_6622_length_388_cov_6.501449_g6222_i0 PRJNA1120771 6622 388 6.501449 25.22562212 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.003   NTclustered gi|470476036|ref|XM_004342168.1| 1257118 g6222 i0 100 0.368556701030928 30 0 8 0 80 109 556 527 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_115170), partial mRNA blastn 143 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4856564 4856564 PRJNA1120771_S_NODE_26984_length_231_cov_3.973404_g26584_i0 PRJNA1120771 26984 231 3.973404 9.17856324 Cochliopodium 313557 Discosea other_Eukaryota 274 4.05e-69   NTclustered gi|59876024|gb|AY785057.1| 313998 g26584 i0 90.233 33.6623376623377 215 14 90 6 24 231 247 461 Cochliopodium sp. strain Kiel 18S ribosomal RNA gene, partial sequence blastn 7776 274 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. strain Kiel
9204486 9204486 PRJNA1120771_S_NODE_10048_length_335_cov_2.458904_g9648_i0 PRJNA1120771 10048 335 2.458904 8.2373284 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 93.5 1.86e-14   NTclustered gi|470529098|ref|XM_004367958.1| 1257118 g9648 i0 88.608 0.653731343283582 79 5 23 3 221 297 1248 1172 Acanthamoeba castellanii str. Neff 4hydroxyphenylpyruvate dioxygenase (ACA1_290240), partial mRNA blastn 219 93.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10480350 10480350 PRJNA1120771_S_NODE_7309_length_375_cov_2.334337_g6909_i0 PRJNA1120771 7309 375 2.334337 8.75376375 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 643 4.629999999999999e-180   NTclustered gi|330902861|gb|JF298256.1| 1017091 g6909 i0 97.606 52.448 376 8 100 1 1 375 143 518 Cochliopodium larifeili clone 907 18S ribosomal RNA gene, partial sequence blastn 19668 643 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
14305559 14305559 PRJNA1120771_S_NODE_35652_length_205_cov_3.888889_g35252_i0 PRJNA1120771 35652 205 3.888889 7.97222245 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 346 7.33e-91   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g35252 i0 97.101 41.8243902439024 207 3 100 3 1 205 193 398 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 8574 346 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
18128395 18128395 PRJNA1120771_S_NODE_34835_length_208_cov_5.066667_g34435_i0 PRJNA1120771 34835 208 5.066667 10.53866736 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 198 2.2099999999999998e-46   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g34435 i0 99.091 17.4567307692308 110 1 53 0 1 110 1116 1007 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 3631 198 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;