RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

26 rows where analysis = "blastn", bioproject = "PRJNA1120771" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 26 ✖

tax_clade 1

bioproject 1

  • PRJNA1120771 · 26 ✖

analysis 1

  • blastn · 26 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3579182 3579182 PRJNA1120771_S_NODE_30343_length_220_cov_41.542373_g29943_i0 PRJNA1120771 30343 220 41.542373 91.3932206 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 379 7.869999999999999e-101   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g29943 i0 97.727 95.3954545454545 220 5 100 0 1 220 2584 2365 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 20987 379 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
3579206 3579206 PRJNA1120771_S_NODE_9923_length_336_cov_8.853242_g9523_i0 PRJNA1120771 9923 336 8.853242 29.74689312 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 616 8.96e-172   NTclustered gi|13194559|gb|AF300281.1|AF300281 151077 g9523 i0 99.702 100.053571428571 336 1 100 0 1 336 1198 1533 Chilodonella uncinata clone 1 18S small subunit ribosomal RNA gene, partial sequence blastn 33618 616 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
4103650 4103650 PRJNA1120771_S_NODE_20604_length_258_cov_2.427907_g20204_i0 PRJNA1120771 20604 258 2.427907 6.26400006 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g20204 i0 100 0.22093023255814 29 0 11 0 1 29 9 37 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
4856549 4856549 PRJNA1120771_S_NODE_18084_length_271_cov_6.206140_g17684_i0 PRJNA1120771 18084 271 6.20614 16.8186394 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 496 9.55e-136   NTclustered gi|2065561668|gb|MZ540265.1| 44029 g17684 i0 99.631 99.8450184501845 271 1 100 0 1 271 42 312 Paramecium jenningsi isolate UR02 small subunit ribosomal RNA gene, partial sequence blastn 27058 496 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium jenningsi
4856580 4856580 PRJNA1120771_S_NODE_35864_length_204_cov_12.223602_g35464_i0 PRJNA1120771 35864 204 12.223602 24.93614808 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 377 2.59e-100   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g35464 i0 100 100.220588235294 204 0 100 0 1 204 2566 2769 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 20445 377 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
5379678 5379678 PRJNA1120771_S_NODE_10505_length_330_cov_4.337979_g10105_i0 PRJNA1120771 10505 330 4.337979 14.3153307 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 566 8.97e-157   NTclustered gi|512134949|gb|JX178908.1| 1295638 g10105 i0 97.576 98.4181818181818 330 8 100 0 1 330 1384 1055 Vorticella sp. 4 JG-2011 clone 8 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 32478 566 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
7929416 7929416 PRJNA1120771_S_NODE_1027_length_872_cov_5.242461_g798_i0 PRJNA1120771 1027 872 5.242461 45.71425992 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 1144 0   NTclustered gi|347439268|gb|JN111981.1| 151077 g798 i0 93.231 22.4988532110092 783 43 90 9 1 781 775 1 Chilodonella uncinata strain ATCC 50194 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 19619 1144 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
7929618 7929618 PRJNA1120771_S_NODE_6707_length_386_cov_25.702624_g6307_i0 PRJNA1120771 6707 386 25.702624 99.21212864 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 577 4.9199999999999984e-160   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g6307 i0 96.296 34.2176165803109 351 13 91 0 31 381 1 351 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 13208 577 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
7929624 7929624 PRJNA1120771_S_NODE_7267_length_375_cov_27.819277_g6867_i0 PRJNA1120771 7267 375 27.819277 104.32228875 Euplotes eurystomus 5941 SAR_Eukaryotes SAR_Eukaryotes 235 3.3e-57   NTclustered gi|159037|gb|M57231.1|EUPUBQP 5941 g6867 i0 82.89 86.7626666666667 263 43 70 2 114 375 623 362 Euplotes eurystomus macronuclear polyubiquitin, complete cds blastn 32536 235 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes eurystomus
8681779 8681779 PRJNA1120771_S_NODE_9607_length_340_cov_7.872054_g9207_i0 PRJNA1120771 9607 340 7.872054 26.7649836 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 568 2.5799999999999993e-157   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g9207 i0 98.746 93.3264705882353 319 4 94 0 1 319 1134 1452 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 31731 568 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
11755162 11755162 PRJNA1120771_S_NODE_2670_length_550_cov_23.759369_g2306_i0 PRJNA1120771 2670 550 23.759369 130.6765295 Chilodonella uncinata 151077 SAR_Eukaryotes SAR_Eukaryotes 959 0   NTclustered gi|13194559|gb|AF300281.1|AF300281 151077 g2306 i0 99.619 95.72 525 2 95 0 26 550 350 874 Chilodonella uncinata clone 1 18S small subunit ribosomal RNA gene, partial sequence blastn 52646 959 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
11755185 11755185 PRJNA1120771_S_NODE_30070_length_221_cov_6.870787_g29670_i0 PRJNA1120771 30070 221 6.870787 15.18443927 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g29670 i0 100 0.257918552036199 29 0 13 0 1 29 9 37 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
12507304 12507304 PRJNA1120771_S_NODE_15150_length_289_cov_93.853659_g14750_i0 PRJNA1120771 15150 289 93.853659 271.23707451 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 278 4.0500000000000005e-70   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g14750 i0 97.531 70.8235294117647 162 4 71 0 128 289 3082 2921 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 20468 278 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
12507356 12507356 PRJNA1120771_S_NODE_7370_length_374_cov_2.329305_g6970_i0 PRJNA1120771 7370 374 2.329305 8.7116007 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 610 4.68e-170   NTclustered gi|10853|emb|X56168.1| 5912 g6970 i0 99.7 101.366310160428 333 1 100 0 42 374 222 554 T.tropicalis gene for small subunit ribosomal RNA (16S like rRNA) blastn 37911 610 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena tropicalis
13030261 13030261 PRJNA1120771_S_NODE_16191_length_283_cov_1.866667_g15791_i0 PRJNA1120771 16191 283 1.866667 5.28266761 Remanella sp. 1 BS-2022 2930476 SAR_Eukaryotes SAR_Eukaryotes 58.4 5.61e-4   NTclustered gi|2261269021|emb|OX095846.1| 2930476 g15791 i0 92.683 0.547703180212014 41 1 14 2 243 283 50 12 Remanella sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863273, clone N44:18S_rRNA::TRINITY_DN644_c0_g1_i12:99-1693(+) blastn 155 58.4 1 Eukaryota Sar   Ciliophora Karyorelictea Loxodida Loxodidae Remanella Remanella sp. 1 BS-2022
13030376 13030376 PRJNA1120771_S_NODE_36291_length_203_cov_2.687500_g35891_i0 PRJNA1120771 36291 203 2.6875 5.455625 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 93.5 1.04e-14   NTclustered gi|829157134|ref|XM_001011598.2| 312017 g35891 i0 85.556 0.58128078817734 90 11 44 2 115 203 894 806 Tetrahymena thermophila SB210 60S ribosomal protein L5 partial mRNA blastn 118 93.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
14305523 14305523 PRJNA1120771_S_NODE_30952_length_219_cov_0.988636_g30552_i0 PRJNA1120771 30952 219 0.988636 2.16511284 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.001   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g30552 i0 100 0.264840182648402 30 0 14 0 1 30 9 38 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 58 56.5 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
15579581 15579581 PRJNA1120771_S_NODE_40633_length_183_cov_11.642857_g40233_i0 PRJNA1120771 40633 183 11.642857 21.30642831 Kentrophoros sp. 1 BS-2022 2930470 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|2261268989|emb|OX095830.1| 2930470 g40233 i0 100 0.770491803278688 29 0 16 0 1 29 10 38 Kentrophoros sp. 1 BS-2022 partial 18S rRNA gene, isolate SAMEA13863266, clone N10:18S_rRNA::TRINITY_DN246_c0_g1_i2:46-1672(+) blastn 141 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Kentrophoridae Kentrophoros Kentrophoros sp. 1 BS-2022
16331028 16331028 PRJNA1120771_S_NODE_7653_length_368_cov_29.947692_g7253_i0 PRJNA1120771 7653 368 29.947692 110.20750656 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 680 0   NTclustered gi|2065561668|gb|MZ540265.1| 44029 g7253 i0 100 99.9701086956522 368 0 100 0 1 368 544 911 Paramecium jenningsi isolate UR02 small subunit ribosomal RNA gene, partial sequence blastn 36789 680 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium jenningsi
18128296 18128296 PRJNA1120771_S_NODE_20255_length_260_cov_1.695853_g19855_i0 PRJNA1120771 20255 260 1.695853 4.4092178 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g19855 i0 100 0.219230769230769 29 0 11 0 1 29 9 37 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
18128431 18128431 PRJNA1120771_S_NODE_6435_length_392_cov_7.143266_g6035_i0 PRJNA1120771 6435 392 7.143266 28.00160272 Tetrahymena malaccensis 5901 SAR_Eukaryotes SAR_Eukaryotes 126 2.18e-24   NTclustered gi|114329811|ref|NC_008337.1| 5901 g6035 i0 82.781 23.3647959183673 151 17 40 8 112 257 2797 2651 Tetrahymena malaccensis mitochondrion, complete genome blastn 9159 126 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
20677977 20677977 PRJNA1120771_S_NODE_1157_length_814_cov_30.669261_g905_i0 PRJNA1120771 1157 814 30.669261 249.64778454 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 1365 0   NTclustered gi|1389430805|gb|MH341633.1| 1938391 g905 i0 96.929 59.3194103194103 814 25 100 0 1 814 1516 2329 Chilodonella hexasticha strain C.hexasticha AS large subunit ribosomal RNA gene, partial sequence blastn 48286 1365 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
20678039 20678039 PRJNA1120771_S_NODE_20617_length_258_cov_2.320930_g20217_i0 PRJNA1120771 20617 258 2.32093 5.9879994 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 422 1.55e-113   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g20217 i0 96.124 16.593023255814 258 10 100 0 1 258 390 647 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 4281 422 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
20678041 20678041 PRJNA1120771_S_NODE_20677_length_258_cov_1.125581_g20277_i0 PRJNA1120771 20677 258 1.125581 2.90399898 Trachelocercidae sp. 3 BS-2022 2930473 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|2261268975|emb|OX095823.1| 2930473 g20277 i0 100 0.22093023255814 29 0 11 0 1 29 9 37 Trachelocercidae sp. 3 BS-2022 partial 18S rRNA gene, isolate SAMEA13863269, clone N34:18S_rRNA::TRINITY_DN3988_c0_g1_i52:177-1769(-) blastn 57 54.7 1 Eukaryota Sar   Ciliophora Karyorelictea Protostomatida Trachelocercidae   Trachelocercidae sp. 3 BS-2022
21953397 21953397 PRJNA1120771_S_NODE_2158_length_601_cov_12.265233_g1818_i0 PRJNA1120771 2158 601 12.265233 73.71405033 Paramecium caudatum 5885 SAR_Eukaryotes SAR_Eukaryotes 86.1 5.87e-12   NTclustered gi|299830252|ref|NC_014262.1| 5885 g1818 i0 80.909 0.43261231281198 110 19 18 2 494 601 1490 1381 Paramecium caudatum mitochondrion, complete genome blastn 260 86.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium caudatum
25254854 25254854 PRJNA1120771_S_NODE_16560_length_280_cov_15.455696_g16160_i0 PRJNA1120771 16560 280 15.455696 43.2759488 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 501 2.13e-137   NTclustered gi|1837628855|gb|MN158348.1| 5909 g16160 i0 98.929 98.7714285714286 280 3 100 0 1 280 2944 2665 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 27656 501 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;