RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1120771" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1120771 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19402540 19402540 PRJNA1120771_S_NODE_33636_length_211_cov_3.976190_g33236_i0 PRJNA1120771 33636 211 3.97619 8.3897609 Nitzschia anomala 3068543 SAR_Eukaryotes SAR_Eukaryotes 117 6.48e-22   NTclustered gi|2721953953|gb|OR464344.1| 3068543 g33236 i0 84.874 60.042654028436 119 15 55 3 40 156 42933 42816 Nitzschia anomala mitochondrion, complete genome blastn 12669 117 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia anomala
20154959 20154959 PRJNA1120771_S_NODE_9096_length_347_cov_6.203947_g8696_i0 PRJNA1120771 9096 347 6.203947 21.52769609 Pseudo-nitzschia 41953 SAR_Eukaryotes SAR_Eukaryotes 174 6.72e-39   NTclustered gi|2852238191|gb|PQ498357.1| 183589 g8696 i0 78.893 70.3659942363112 289 37 80 17 2 279 34125 33850 Pseudo-nitzschia multistriata isolate CNS00142 mitochondrion, complete genome blastn 24417 174 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
20678034 20678034 PRJNA1120771_S_NODE_19917_length_261_cov_4.266055_g19517_i0 PRJNA1120771 19917 261 4.266055 11.13440355 Minutocellus polymorphus 265543 SAR_Eukaryotes SAR_Eukaryotes 124 4.969999999999999e-24   NTclustered gi|2020303798|gb|MW417227.1| 265543 g19517 i0 78.155 4.46743295019157 206 37 77 7 60 261 8691 8490 Minutocellus polymorphus isolate CNS00217 mitochondrion, complete genome blastn 1166 124 1 Eukaryota Sar   Bacillariophyta Mediophyceae Cymatosirales Cymatosiraceae Minutocellus Minutocellus polymorphus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;