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contig_metadata

27 rows where analysis = "blastn", bioproject = "PRJNA1120771" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 27 ✖

bioproject 1

  • PRJNA1120771 · 27 ✖

analysis 1

  • blastn · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1028553 1028553 PRJNA1120771_S_NODE_22781_length_248_cov_4.653659_g22381_i0 PRJNA1120771 22781 248 4.653659 11.54107432 Chlorella 3071 Plants Plants 337 5.53e-88   NTclustered gi|671743011|ref|NC_024626.1| 3076 g22381 i0 91.165 94.8911290322581 249 21 100 1 1 248 9280 9528 Chlorella sorokiniana isolate 1230 mitochondrion, complete genome blastn 23533 337 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
1551121 1551121 PRJNA1120771_S_NODE_17262_length_276_cov_3.356223_g16862_i0 PRJNA1120771 17262 276 3.356223 9.26317548 Coccomyxa subellipsoidea 248742 Plants Plants 141 5.270000000000001e-29   NTclustered gi|545357354|ref|XM_005644277.1| 574566 g16862 i0 92.784 0.351449275362319 97 7 35 0 1 97 307 403 Coccomyxa subellipsoidea C-169 CP12-domain-containing protein mRNA blastn 97 141 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
2303889 2303889 PRJNA1120771_S_NODE_32782_length_214_cov_1.017544_g32382_i0 PRJNA1120771 32782 214 1.017544 2.17754416 Eukaryota 2759 Plants Plants 60.2 1.13e-4   NTclustered gi|2306645722|gb|OK189530.1| 121088 g32382 i0 94.872 6.17757009345794 39 1 18 1 151 188 66808 66846 Ostreobium quekettii voucher Chloroplast genome chloroplast, complete genome blastn 1322 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
2827202 2827202 PRJNA1120771_S_NODE_12143_length_314_cov_2.206642_g11743_i0 PRJNA1120771 12143 314 2.206642 6.92885588 Coccomyxa subellipsoidea 248742 Plants Plants 165 3.62e-36   NTclustered gi|545359564|ref|XM_005645183.1| 574566 g11743 i0 96.939 2.29299363057325 98 3 31 0 1 98 91 188 Coccomyxa subellipsoidea C-169 ribosomal protein L38 component of cytosolic 80S ribosome and 60S large subunit partial mRNA blastn 720 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
6654394 6654394 PRJNA1120771_S_NODE_10546_length_330_cov_1.731707_g10146_i0 PRJNA1120771 10546 330 1.731707 5.7146331 Dicloster acuatus 91190 Plants Plants 145 4.98e-30   NTclustered gi|2724824305|gb|PP746556.1| 91190 g10146 i0 80.928 34.7212121212121 194 27 58 6 113 305 2068 1884 Dicloster acuatus culture SAG:41.98 mitochondrion, complete genome blastn 11458 145 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
6654518 6654518 PRJNA1120771_S_NODE_30646_length_220_cov_0.983051_g30246_i0 PRJNA1120771 30646 220 0.983051 2.1627122 Tetraselmis striata 3165 Plants Plants 189 1.42e-43   NTclustered gi|21969|emb|X70693.1| 3165 g30246 i0 92.424 25.3863636363636 132 10 60 0 89 220 434 303 T.striata mRNA for centrin (caltractin) blastn 5585 189 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis striata
10480210 10480210 PRJNA1120771_S_NODE_21469_length_254_cov_2.037915_g21069_i0 PRJNA1120771 21469 254 2.037915 5.1763041 Monoraphidium neglectum 145388 Plants Plants 76.8 1.37e-9   NTclustered gi|926771609|ref|XM_014038825.1| 145388 g21069 i0 92.453 1.13779527559055 53 4 21 0 202 254 287 235 Monoraphidium neglectum 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) mRNA blastn 289 76.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
11231838 11231838 PRJNA1120771_S_NODE_1249_length_782_cov_7.020298_g989_i0 PRJNA1120771 1249 782 7.020298 54.89873036 Trebouxiophyceae 75966 Plants Plants 63.9 3.62e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g989 i0 95 7.89641943734015 40 2 5 0 400 439 37 76 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6175 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
14305432 14305432 PRJNA1120771_S_NODE_1912_length_637_cov_12.383838_g1591_i0 PRJNA1120771 1912 637 12.383838 78.88504806 Trebouxia lynnae 1825957 Plants Plants 69.4 6.28e-7   NTclustered gi|1750939486|gb|MH917293.1| 1825957 g1591 i0 95.349 0.373626373626374 43 2 7 0 2 44 17252 17294 Trebouxia sp. TR9 mitochondrion, complete genome blastn 238 69.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
14305547 14305547 PRJNA1120771_S_NODE_33772_length_211_cov_1.773810_g33372_i0 PRJNA1120771 33772 211 1.77381 3.7427391 Coccomyxa subellipsoidea 248742 Plants Plants 156 1.37e-33   NTclustered gi|545374214|ref|XM_005651360.1| 574566 g33372 i0 94.118 27.2274881516588 102 6 48 0 1 102 717 818 Coccomyxa subellipsoidea C-169 chlorophyll a/b-binding protein mRNA blastn 5745 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
14305619 14305619 PRJNA1120771_S_NODE_9552_length_341_cov_3.795302_g9152_i0 PRJNA1120771 9552 341 3.795302 12.94197982 Coccomyxa subellipsoidea 248742 Plants Plants 122 2.4199999999999998e-23   NTclustered gi|545374214|ref|XM_005651360.1| 574566 g9152 i0 92.857 1.74193548387097 84 6 25 0 1 84 728 811 Coccomyxa subellipsoidea C-169 chlorophyll a/b-binding protein mRNA blastn 594 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
15579606 15579606 PRJNA1120771_S_NODE_7693_length_368_cov_3.436923_g7293_i0 PRJNA1120771 7693 368 3.436923 12.64787664 Coccomyxa subellipsoidea 248742 Plants Plants 196 1.53e-45   NTclustered gi|545367032|ref|XM_005648325.1| 574566 g7293 i0 92.086 24.2554347826087 139 11 38 0 230 368 920 782 Coccomyxa subellipsoidea C-169 hypothetical protein mRNA blastn 8926 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
16853759 16853759 PRJNA1120771_S_NODE_10314_length_332_cov_3.961938_g9914_i0 PRJNA1120771 10314 332 3.961938 13.15363416 Chlamydomonas reinhardtii 3055 Plants Plants 139 2.33e-28   NTclustered gi|2082247485|ref|XM_001696149.2| 3055 g9914 i0 83.673 4.51807228915663 147 24 44 0 142 288 496 642 Chlamydomonas reinhardtii ribosomal protein S8 (CHLRE_06g272800v5), mRNA blastn 1500 139 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
16853811 16853811 PRJNA1120771_S_NODE_18794_length_267_cov_3.982143_g18394_i0 PRJNA1120771 18794 267 3.982143 10.63232181 Scherffelia dubia 3190 Plants Plants 196 1.07e-45   NTclustered gi|371782096|emb|HE610128.1| 3190 g18394 i0 81.452 67.6217228464419 248 39 92 7 1 245 2818 2575 Scherffelia dubia 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 17.86 blastn 18055 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Scherffelia Scherffelia dubia
16853879 16853879 PRJNA1120771_S_NODE_27114_length_231_cov_1.702128_g26714_i0 PRJNA1120771 27114 231 1.702128 3.93191568 Auxenochlorella protothecoides 3075 Plants Plants 119 2.01e-22   NTclustered gi|760440168|ref|XM_011398851.1| 3075 g26714 i0 78.689 0.792207792207792 183 35 78 4 34 214 2081 1901 Auxenochlorella protothecoides Threonine-tRNA ligase, mitochondrial partial mRNA blastn 183 119 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
17606235 17606235 PRJNA1120771_S_NODE_16714_length_279_cov_32.381356_g16314_i0 PRJNA1120771 16714 279 32.381356 90.34398324 root 1 Root_unresolved Root_unresolved 278 3.89e-70   NTclustered gi|1279575454|gb|MF683078.1| 44745 g16314 i0 99.346 54.594982078853 153 1 55 0 127 279 911 759 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 15232 278 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
20677993 20677993 PRJNA1120771_S_NODE_14177_length_296_cov_8.418972_g13777_i0 PRJNA1120771 14177 296 8.418972 24.92015712 Chlamydomonas sp. SPMO 176-2 327072 Plants Plants 150 9.469999999999999e-32   NTclustered gi|66864278|gb|DQ015733.1| 327072 g13777 i0 96.739 31.9864864864865 92 0 31 3 26 116 1780 1869 Chlamydomonas sp. SPMO 176-2 26S ribosomal RNA gene, partial sequence blastn 9468 150 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. SPMO 176-2
21430540 21430540 PRJNA1120771_S_NODE_8857_length_350_cov_30.006515_g8457_i0 PRJNA1120771 8857 350 30.006515 105.0228025 Trebouxiophyceae 75966 Plants Plants 630 3.3399999999999984e-176   NTclustered gi|359385265|emb|FR865679.1| 3082 g8457 i0 99.143 99.9971428571429 350 3 100 0 1 350 600 949 'Chlorella' saccharophila genomic DNA containing 18S rRNA gene, ITS1, culture collection CCAP 211/60 blastn 34999 636 0.990566037735849 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium saccharophilum
21953452 21953452 PRJNA1120771_S_NODE_29838_length_222_cov_3.480447_g29438_i0 PRJNA1120771 29838 222 3.480447 7.72659234 Paradoxia multiseta 249350 Plants Plants 366 6.19e-97   NTclustered gi|723457039|ref|NC_025540.1| 249350 g29438 i0 99.02 131.22972972973 204 2 92 0 1 204 2081 1878 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 29133 366 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta
21953458 21953458 PRJNA1120771_S_NODE_3118_length_516_cov_14.983087_g2735_i0 PRJNA1120771 3118 516 14.983087 77.31272892 Deuterostichococcus epilithicus 2710713 Plants Plants 91.6 1.07e-13   NTclustered gi|1810811900|gb|MT078166.1| 2710713 g2735 i0 78.571 14.2674418604651 154 22 30 11 1 153 2227 2084 Deuterostichococcus epilithicus strain SAG 2119 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 7362 91.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Deuterostichococcus Deuterostichococcus epilithicus
21953479 21953479 PRJNA1120771_S_NODE_34078_length_210_cov_3.197605_g33678_i0 PRJNA1120771 34078 210 3.197605 6.7149705 Coccomyxa subellipsoidea 248742 Plants Plants 130 8.280000000000001e-26   NTclustered gi|545360023|ref|XM_005645368.1| 574566 g33678 i0 87.179 0.557142857142857 117 12 54 1 1 114 160 276 Coccomyxa subellipsoidea C-169 hypothetical protein partial mRNA blastn 117 130 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
22705476 22705476 PRJNA1120771_S_NODE_25718_length_236_cov_7.740933_g25318_i0 PRJNA1120771 25718 236 7.740933 18.26860188 Jaagichlorella 2304164 Plants Plants 313 8.79e-81   NTclustered gi|478437260|gb|KC470085.1| 445995 g25318 i0 93.365 89.8559322033898 211 14 89 0 26 236 3144 3354 Heveochlorella hainangensis strain SAG 2360 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 21206 313 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Jaagichlorella Jaagichlorella hainangensis
22705490 22705490 PRJNA1120771_S_NODE_29158_length_224_cov_4.751381_g28758_i0 PRJNA1120771 29158 224 4.751381 10.64309344 Chlorellales 35460 Plants Plants 403 4.7699999999999995e-108   NTclustered gi|1518373086|gb|MK201749.1| 464287 g28758 i0 99.107 99.4464285714286 224 2 100 0 1 224 929 706 Pseudococcomyxa simplex strain KZ-5-4-4 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22276 403 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Oocystaceae Pseudococcomyxa Pseudococcomyxa simplex
23228837 23228837 PRJNA1120771_S_NODE_12839_length_307_cov_24.564394_g12439_i0 PRJNA1120771 12839 307 24.564394 75.41268958 Jaagichlorella geometrica 2304165 Plants Plants 505 1.83e-138   NTclustered gi|1462569184|gb|MH780944.1| 2304165 g12439 i0 98.936 93.3094462540717 282 3 92 0 26 307 666 947 Jaagichlorella geometrica strain SAG 2549 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 28646 505 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Jaagichlorella Jaagichlorella geometrica
23228863 23228863 PRJNA1120771_S_NODE_15879_length_285_cov_1.797521_g15479_i0 PRJNA1120771 15879 285 1.797521 5.12293485 Coccomyxa sp. (in: green algae) 2911190 Plants Plants 527 3.59e-145   NTclustered gi|2392793409|gb|OP964773.1| 2911190 g15479 i0 100 91.3754385964912 285 0 100 0 1 285 172 456 Coccomyxa sp. (in: green algae) strain IO131-01 large subunit ribosomal RNA gene, partial sequence blastn 26042 527 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. (in: green algae)
23228888 23228888 PRJNA1120771_S_NODE_19639_length_263_cov_1.581818_g19239_i0 PRJNA1120771 19639 263 1.581818 4.16018134 Coccomyxa sp. Obi 2315456 Plants Plants 339 1.65e-88   NTclustered gi|2106301899|dbj|AP025007.1| 2315456 g19239 i0 97.015 96.9505703422053 201 6 92 0 63 263 50368 50568 Coccomyxa sp. Obi mitochondrial DNA, complete genome blastn 25498 339 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
23980804 23980804 PRJNA1120771_S_NODE_18739_length_267_cov_30.861607_g18339_i0 PRJNA1120771 18739 267 30.861607 82.40049069 root 1 Root_unresolved Root_unresolved 178 3.86e-40   NTclustered gi|1279575454|gb|MF683078.1| 44745 g18339 i0 99 37.4419475655431 100 0 37 1 169 267 858 759 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 9997 178 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;